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BioLiP
>protein
PRYYEYRHVVGFEETNLVGNVYYVNYLRWQGRCREMFLYEHAPEILDELRADLKLFTLKAECEFFAELAPFDRLAVRMRL
VELTQTQMELGFDYLRLGGDDLLVARGRQRIACMRGPNGRTEPVRVPAGLVRAFAPFRSAT

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2w3x:E 144 141 1.0000 0.9792 1.0000 6.16e-102 2w3x:A, 2w3x:C, 2w3x:D, 2w3x:F
2 2xem:B 136 133 0.4610 0.4779 0.4887 1.93e-39
3 5ncc:A 578 51 0.1064 0.0260 0.2941 0.81 7av4:AAA, 5ncc:B, 5ncc:C, 5ncc:D, 5ncc:E, 5ncc:F, 7r33:A, 7r33:B, 7r34:A, 7r34:B, 7r35:A, 7r35:B, 7r36:A, 7r36:B, 6yru:AAA, 6yrv:AAA, 6yrx:AAA, 6yrz:AAA, 6ys1:AAA, 6ys2:AAA, 6zh7:A, 6zh7:B
4 5kl9:A 134 127 0.2057 0.2164 0.2283 3.1 5kl9:D, 5t06:A, 5t06:C, 5t07:A, 5t07:D, 5t07:B, 5t07:C
5 3fa5:A 276 57 0.1135 0.0580 0.2807 4.2 3fa5:B
6 7pci:A 345 70 0.1277 0.0522 0.2571 4.8 7pcc:A, 7pcc:B, 7pce:A, 7pcg:A, 7pcg:B, 7pcl:A, 7pcl:B, 7pcm:A, 7pcm:B, 7pcn:A, 7pcn:B, 7pco:A, 7pco:B, 7pct:A, 7pct:B
7 1nw1:A 365 27 0.0780 0.0301 0.4074 4.9 1nw1:B
8 6hiv:DX 141 57 0.1206 0.1206 0.2982 5.0 6hiw:DX, 6hiz:DX, 7pua:DX, 7pub:DX, 6sg9:DX

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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