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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRYWSLYYREKIIEGMEKGMTAKAGLIAHGRGEAFDYLIGERTIEPAERAMRAAVAKLLLAENPVVSVNGNVAALVPKET
IELARALNAKLEINLFYRTEDRVKAIAEELRKYDPEIELLGINPTKRIPGLEHERGKVDENGIWKADVVVVPLEDGDRTE
ALVRMGKFVITIDLNPLSRSARMADITIVDNIVRAYPRMTELAREMKDYSRGELIRIIEEYDNGKTLNDVLLHIRDRLTK
LAEGGIWRKKQL

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wdm:A 259 252 0.9127 0.8880 0.9127 1.86e-170 4mb2:A, 4mb2:B, 4mb2:C, 4mb2:D, 3wdk:A, 3wdk:B, 3wdk:C, 3wdk:D, 3wdl:A, 3wdl:B, 3wdl:C, 3wdl:D, 3wdm:B, 3wdm:C, 3wdm:D
2 4isd:A 187 89 0.0913 0.1230 0.2584 0.36 4isd:B, 4isd:C, 4isd:D, 4isd:E
3 2z9v:A 392 113 0.1111 0.0714 0.2478 0.56 2z9v:B, 2z9w:A, 2z9w:B, 2z9x:A, 2z9x:B
4 3zyj:B 326 43 0.0635 0.0491 0.3721 2.7 3zyj:D
5 8odp:A 505 62 0.0714 0.0356 0.2903 3.2 8btt:A, 8odo:A, 8odo:C, 8odo:E, 8odo:G, 8odp:C, 8odp:E, 8odp:G, 7p3b:A, 7p3b:B
6 1odz:A 379 72 0.0754 0.0501 0.2639 4.0 1gvy:A, 1gw1:A, 1j9y:A, 1odz:B, 1r7o:A, 2whm:A
7 3qw9:A 170 35 0.0556 0.0824 0.4000 4.3
8 5jio:A 467 65 0.0913 0.0493 0.3538 4.4 5k41:A, 5k42:A, 5k44:A, 5k5c:A, 5l3k:A, 5l3k:B, 5l3k:C, 5l3k:D, 5l3k:E, 5l3k:F, 5l3k:G, 5l3k:H
9 6zdp:A 683 60 0.0595 0.0220 0.2500 5.3
10 4h6z:A 147 32 0.0476 0.0816 0.3750 6.2 4h6z:B
11 4yrh:A 177 32 0.0476 0.0678 0.3750 6.5 4hkf:A, 4yrh:B
12 5fjm:A 447 27 0.0476 0.0268 0.4444 6.7 5fjm:B, 5fjn:A, 5fjn:B
13 8ppp:A 500 77 0.0913 0.0460 0.2987 7.6 8ppp:B, 8pyx:A, 8pyx:B
14 3iwc:A 59 18 0.0437 0.1864 0.6111 7.6 3iwc:C, 3iwd:A, 3iwd:C
15 6khu:A 131 75 0.0714 0.1374 0.2400 7.6
16 4h6u:A 165 32 0.0476 0.0727 0.3750 7.9 4h6u:B
17 3rsb:B 185 59 0.0595 0.0811 0.2542 9.7 3rsb:A, 3rsb:C, 3rsb:D
18 7yfl:B 679 79 0.0913 0.0339 0.2911 9.7 7yfl:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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