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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PRYELALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNRGGYFLVDFYAPTAAVESMVEH
LSRDIDVIRGNIVKHPLTQELKECEGIVPVPLAEKLYS

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a5f:E6 122 118 1.0000 0.9672 1.0000 4.62e-85 7a5g:E6, 7a5i:E6, 7a5k:E6, 8any:AE, 8csp:E, 8csq:E, 8csr:E, 8css:E, 8cst:E, 8csu:E, 3j9m:AE, 8k2a:SF, 7l08:AE, 6nu2:AE, 6nu3:AE, 7og4:AE, 8oir:AE, 8ois:AE, 7p2e:E, 7pnx:E, 7pny:E, 7pnz:E, 7po0:E, 7po1:E, 7po2:E, 7po3:E, 7qi4:AE, 7qi5:AE, 7qi6:AE, 8qrk:E, 8qrl:E, 8qrm:E, 8qrn:E, 6rw4:E, 6rw5:E, 6vlz:AE, 6vmi:AE, 8xt0:SF, 8xt2:SF, 6zm5:AE, 6zm6:AE, 6zs9:AE, 6zsa:AE, 6zsb:AE, 6zsc:AE, 6zsd:AE, 6zse:AE, 6zsg:AE
2 7pnt:E 122 118 0.8559 0.8279 0.8559 3.34e-74 7pnu:E, 7pnv:E, 7pnw:E
3 3jd5:F 124 118 0.8475 0.8065 0.8475 1.29e-73 5aj3:F, 5aj4:AF, 6gaw:AF, 6gaz:AF, 6neq:F, 6nf8:F, 7nqh:AF, 7nql:AF, 7nsi:AF, 7nsj:AF, 8oin:AE, 8oip:AE, 6ydp:AF, 6ydw:AF
4 6yw5:FF 117 85 0.2458 0.2479 0.3412 1.61e-09 6ywe:FF, 6ywx:FF, 6ywy:FF
5 8a22:Bf 119 96 0.2119 0.2101 0.2604 1.04e-07 8apn:Bf, 8apo:Bf
6 8d8j:F 131 96 0.2373 0.2137 0.2917 1.69e-06 8d8k:F, 8d8l:F, 5mrc:FF, 5mre:FF, 5mrf:FF, 8om2:F, 8om3:F, 8om4:F
7 7pkq:f 103 101 0.2119 0.2427 0.2475 3.02e-06
8 6dzi:n 96 93 0.2034 0.2500 0.2581 0.013 6dzk:F, 8fr8:g, 7kgb:f, 7msc:f, 7msh:f, 7msm:f, 7msz:f, 7mt2:f, 7mt3:f, 7mt7:f, 5o5j:F, 5o61:BF, 7sfr:f, 5v93:f, 8v9j:f, 8v9k:f, 8v9l:f, 8whx:g, 8wi7:g, 8wi9:g, 8wib:g, 8wid:g, 8wif:g, 5zeb:f, 5zep:f, 5zeu:f
9 8uu8:f 95 100 0.2119 0.2632 0.2500 0.063 7nhn:g, 8uu4:f, 8uu5:f, 8uu6:f, 8uu7:f, 8uu9:f
10 8cdu:T 95 100 0.2034 0.2526 0.2400 0.12 8buu:f, 8cdv:T, 8cec:T, 8ced:T, 8cee:T, 6ha1:f, 6ha8:f, 6htq:f, 3j9w:AF, 7o5b:F, 8qcq:f, 7qgu:k, 7qh4:j, 8qpp:F, 7qv1:f, 7qv2:f, 7qv3:f, 8r55:F
11 5k0t:B 468 39 0.1186 0.0299 0.3590 0.62
12 5k0s:C 497 39 0.1186 0.0282 0.3590 0.63 5k0s:A, 5k0s:B, 5k0t:A, 5k0t:C, 4py2:A, 4py2:B, 4py2:C
13 7f8d:A 313 50 0.1356 0.0511 0.3200 1.2 7by9:A, 7by9:B, 7by9:C, 7by9:D, 7bya:A, 7bya:B, 7bya:C, 7bya:D, 7f8d:B, 7f8d:C, 7f8d:D, 7x1l:A, 7x1l:B, 7x1l:E, 7x1l:F, 7x1l:C, 7x1l:D
14 4dg4:A 224 66 0.1610 0.0848 0.2879 1.2 1h4w:A, 6har:A, 5jbt:A, 3l33:A, 3l33:B, 3l33:C, 3l33:D, 3l3t:A, 3l3t:B, 3l3t:C, 3l3t:D, 3p92:A, 3p95:A, 5tp0:A, 4u30:A, 4u30:B, 4u30:C, 4u30:D, 4u32:A, 7z9f:X, 7z9f:A
15 5kow:A 474 33 0.1102 0.0274 0.3939 1.4 6c7s:A, 5kox:A
16 4a0l:E 709 33 0.1102 0.0183 0.3939 1.4 4a0l:H, 8ei1:A, 8ei1:B, 8ei1:C, 8ei1:D
17 3r3t:A 95 95 0.1780 0.2211 0.2211 3.1 3r3t:B
18 5t5q:C 245 73 0.1780 0.0857 0.2877 4.6 5t5q:A, 5t5q:B, 5t5q:D
19 6xut:A 589 40 0.1271 0.0255 0.3750 5.5 6xuu:A, 6xuv:A
20 6skf:BX 120 25 0.0847 0.0833 0.4000 6.2 6skg:BX, 6th6:BX
21 5bu2:B 290 27 0.0847 0.0345 0.3704 7.6 5bu2:A, 5bu2:C, 5bu2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218