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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PRWQETAYVLGNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHT
RTEQQFHPEIYKSTKCNDMQQAGSCPRGPFCAFAHIEPPPL

The query sequence (length=121) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5elk:A 121 121 1.0000 1.0000 1.0000 1.95e-88
2 1rgo:A 70 56 0.1653 0.2857 0.3571 7.53e-04
3 1rgo:A 70 73 0.1653 0.2857 0.2740 2.0
4 1rgo:A 70 25 0.0826 0.1429 0.4000 4.4
5 6nzl:A 78 63 0.1488 0.2308 0.2857 0.047
6 6nzl:A 78 78 0.1736 0.2692 0.2692 6.1
7 5elh:A 142 54 0.1653 0.1408 0.3704 0.064 5elh:B
8 7k95:A 53 53 0.1488 0.3396 0.3396 0.26 7zyh:A, 7zyh:D, 7zyh:G, 7zyh:J
9 6o5f:A 417 48 0.1322 0.0384 0.3333 3.3 6o5f:B
10 7liu:A 442 33 0.0992 0.0271 0.3636 3.5 6cz5:A, 5e7j:A, 5e7m:A, 2i4i:A, 7liu:B, 4px9:A, 4px9:B, 4px9:C, 4pxa:A, 8ssw:A, 8ssw:B
11 7r8e:A 548 36 0.1157 0.0255 0.3889 3.9 7fdv:A, 7fdv:D, 7oz1:A, 7oz1:B, 7r8d:A, 7r8d:B, 7r8e:B
12 7tj9:A 1111 23 0.0826 0.0090 0.4348 5.2
13 6imj:A 412 18 0.0661 0.0194 0.4444 7.2 6imj:B, 6imk:A, 6iml:A, 6imn:B, 6imn:A
14 8gz2:B 1174 53 0.1322 0.0136 0.3019 8.8 8gz1:B
15 8fhd:A 1294 53 0.1322 0.0124 0.3019 8.8
16 1m9o:A 40 25 0.0826 0.2500 0.4000 9.5
17 7dco:M 176 36 0.0992 0.0682 0.3333 9.6 5gm6:a

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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