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BioLiP
>protein
PRTVMVNLNIHYYDRSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINADGNVDYHMNSVPIQQEILVLRREPPHSPNSFR
LEKILVSVGCTCVTPI

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vb9:A 108 99 1.0000 0.8889 0.9697 9.31e-67 7ama:A, 7ama:B, 7amg:A, 7amg:B, 7amg:C, 7amg:D, 8cdg:A, 8cdg:B, 8dyf:A, 8dyf:B, 8dyg:A, 8dyg:B, 8dyh:A, 8dyh:B, 8dyi:A, 8dyi:B, 5hhv:A, 5hhx:A, 5hi3:A, 5hi3:B, 5hi4:A, 5hi4:B, 5hi5:A, 5hi5:B, 8usr:A, 8usr:B, 8usr:D, 5vb9:B
2 8uss:A 107 108 0.9167 0.8224 0.8148 2.65e-56
3 3jvf:B 104 91 0.5521 0.5096 0.5824 2.39e-33
4 8htu:H 95 26 0.1042 0.1053 0.3846 0.40 7ksq:H, 7kux:H, 6l35:H, 7xqp:H
5 8opp:A 670 45 0.1354 0.0194 0.2889 0.67
6 8opt:A 783 45 0.1354 0.0166 0.2889 0.68 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
7 8jjm:A 484 43 0.1458 0.0289 0.3256 5.2 8jjm:B
8 2iag:A 471 51 0.1354 0.0276 0.2549 5.3 3b6h:A, 3b6h:B, 2iag:B
9 6z1p:AR 274 58 0.1979 0.0693 0.3276 6.4
10 4pu5:A 438 20 0.0938 0.0205 0.4500 8.5
11 4iru:C 296 37 0.1354 0.0439 0.3514 8.7
12 6wb7:A 296 52 0.1562 0.0507 0.2885 9.3 6wb7:B, 6wb7:C, 6wb7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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