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BioLiP
>protein
PQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLMRLMVAKEARNV
TM

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4uyk:A 82 82 1.0000 1.0000 1.0000 4.36e-58 5aox:A, 5aox:D, 1e8o:A, 1e8o:C, 6frk:w, 3jaj:S1, 3jan:S1, 7nfx:w, 7obr:w, 6r6g:AD, 1ry1:C, 4ue5:E, 4uyj:A, 4uyj:C
2 8je0:A 378 36 0.1951 0.0423 0.4444 0.050 8je0:B, 8je0:C, 8je0:D
3 7bss:A 816 46 0.1463 0.0147 0.2609 7.1 7bsu:A, 7bsv:A, 7bsw:A, 7vsg:A
4 7bsp:A 1028 46 0.1463 0.0117 0.2609 9.1 7bsq:A, 7vsh:A
5 7xz4:A 203 28 0.1220 0.0493 0.3571 9.1
6 6lkn:A 1064 46 0.1463 0.0113 0.2609 9.5 6lkn:E, 6lkn:I, 6lkn:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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