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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PQNEYIELHRKRYGYRLDYHEKKRKKESREAHERSKKAKKMIGLKAKLYHKQRHAEKIQMKKTIKMHEKRNTKTPQGAVP
AYLLDRAGKWEVPLPKVRAQGETEVLKVIRTGKRKKKAWKRMVTKVCFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPE
LKATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNPENDGCINAVLLV

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fl2:NF 233 233 1.0000 1.0000 1.0000 1.61e-173 8fkv:NF, 8fkw:NF, 8fl3:NF, 8fl4:NF, 8ie3:R, 8ink:J, 8ipd:J, 8ipx:J, 8ipy:J
2 8ir1:J 259 259 1.0000 0.8996 0.8996 4.62e-167 8fl0:NF, 8fl6:NF, 8fl7:NF, 8fl9:NF, 8idy:v, 8ine:s, 8inf:s, 8ir3:J
3 8fkx:NF 209 235 0.8283 0.9234 0.8213 5.22e-133 8fkr:NF, 8fks:NF, 8fkt:NF, 8fku:NF, 8fky:NF
4 8fkz:NF 175 233 0.7253 0.9657 0.7253 1.23e-109
5 7bt6:r 230 233 0.6352 0.6435 0.6352 7.27e-106 7btb:r, 6em1:r, 6ft6:r, 8hfr:xd, 3jct:r, 6m62:r, 7oh3:r, 7ohp:r, 7ohq:r, 7ohs:r, 7oht:r, 7ohu:r, 7ohv:r, 7ohw:r, 7ohy:r, 7r7c:r, 7ug6:r, 7uoo:r, 7uqb:r, 7uqz:r, 7v08:r, 6ylg:r, 6ylh:r, 6ylx:r, 6yly:r, 7z34:r
6 8i9w:CK 238 238 0.6395 0.6261 0.6261 9.64e-103 8i9t:CK, 8i9v:CK, 8i9x:CK, 8i9y:CK, 8i9z:CK, 8ia0:CK, 8pv1:CK, 8pv2:CK, 8pv3:CK, 8pv4:CK, 8pv5:CK, 8pv6:CK, 8pv7:CK, 8pv8:CK, 8pvk:CK, 8pvl:CK
7 6n8j:r 204 233 0.5708 0.6520 0.5708 3.02e-90
8 8v87:r 214 236 0.5494 0.5981 0.5424 1.22e-83 8v84:r
9 6elz:r 176 232 0.4893 0.6477 0.4914 7.51e-70 6em5:r, 7nac:r, 7r7a:r, 7u0h:r
10 8esq:r 166 233 0.4979 0.6988 0.4979 6.67e-65 8esr:r, 8etc:r, 8etg:r, 8eti:r, 8etj:r, 8eup:r, 8euy:r, 8ev3:r
11 8v83:r 184 233 0.4764 0.6033 0.4764 1.53e-61
12 7ohr:r 159 232 0.4163 0.6101 0.4181 4.14e-48
13 7of1:r 99 146 0.2446 0.5758 0.3904 3.49e-23
14 8hkx:AS8E 126 85 0.1288 0.2381 0.3529 1.44e-05 8hky:AS8E, 8hkz:AS8E, 8hl1:AS8E, 8hl2:AS8E, 8hl3:AS8E, 8hl4:AS8E, 8hl5:AS8E, 8wkp:AS8E, 8wq2:AS8E, 8wq4:AS8E
15 6tmf:K 126 66 0.1030 0.1905 0.3636 3.03e-05
16 6skf:Ak 125 66 0.1073 0.2000 0.3788 3.90e-04 6skg:Ak, 6th6:Ak
17 5jb3:J 127 64 0.0944 0.1732 0.3438 0.001 5jbh:J, 6sw9:J, 6swc:J, 6swd:J, 4v4n:BJ, 4v6u:AJ, 7zag:J, 7zah:J, 7zai:J, 7zhg:J
18 7pub:IB 511 125 0.1330 0.0607 0.2480 0.022 7pua:IB
19 8kgn:A 1190 61 0.0815 0.0160 0.3115 0.61 8j9v:A, 8j9v:B, 8j9w:B, 8j9w:A, 8j9x:A, 8j9x:B, 8ja1:A, 8ja2:A, 8kgm:A, 8kgm:B, 8kgn:B, 8kgq:A, 8kgq:B, 8kgr:A, 8kgr:B, 8kgs:A, 8kgt:A, 8wwo:A, 8wwo:B, 8wwo:C, 8wwo:D, 8xrf:A, 8xrf:B, 8xrg:A, 8xrh:A, 8xri:A, 8xri:B, 8yge:A, 8yge:B
20 7dde:A 525 68 0.0815 0.0362 0.2794 2.3 7dde:C, 7dde:E, 7dde:G, 7dde:I, 7dde:K, 7dde:M, 7dde:O, 7dde:Q, 7dde:S, 7dde:V, 7dde:X
21 8x15:I 792 63 0.0815 0.0240 0.3016 2.9
22 4j56:A 504 85 0.0858 0.0397 0.2353 4.8 4b1b:A, 4b1b:B, 4j56:B, 4j56:C, 4j56:D, 4j57:A, 4j57:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218