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BioLiP
>protein
PPYSYIALITMAIQNKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPGSYWTL

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ako:C 97 76 1.0000 0.6701 0.8553 3.49e-40 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
2 7vov:A 93 76 0.7538 0.5269 0.6447 5.81e-31 7vou:C, 7vov:B
3 7cby:C 100 76 0.7846 0.5100 0.6711 2.42e-30
4 7yze:A 87 76 0.7692 0.5747 0.6579 1.36e-29 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
5 2hdc:A 97 76 0.7538 0.5052 0.6447 5.89e-28
6 8vfy:O 102 76 0.7538 0.4804 0.6447 7.23e-28 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
7 2c6y:A 98 76 0.6154 0.4082 0.5263 2.79e-21 2c6y:B
8 8bzm:E 95 76 0.5846 0.4000 0.5000 4.21e-21 8bzm:I, 8bzm:A, 8bzm:J
9 7yza:A 122 77 0.5692 0.3033 0.4805 1.05e-18 7yz7:A, 7yzc:A, 7yzd:A
10 6ncm:A 91 70 0.5077 0.3626 0.4714 1.03e-17 6nce:A, 6ncm:B
11 3g73:B 95 74 0.5385 0.3684 0.4730 4.24e-17 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
12 7yzb:A 125 77 0.4923 0.2560 0.4156 4.32e-17
13 2a07:J 83 71 0.4615 0.3614 0.4225 7.93e-17 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
14 6el8:A 89 72 0.5077 0.3708 0.4583 2.17e-16 6el8:D
15 3qrf:G 82 71 0.4923 0.3902 0.4507 2.27e-15 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
16 7yzg:A 121 77 0.4769 0.2562 0.4026 3.45e-15
17 7tdw:A 90 71 0.4615 0.3333 0.4225 3.85e-14 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
18 3co6:C 91 76 0.4462 0.3187 0.3816 3.52e-11 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
19 3l2c:A 85 76 0.4462 0.3412 0.3816 7.91e-11
20 2uzk:A 97 63 0.4000 0.2680 0.4127 2.91e-10 2uzk:C
21 4apy:A 414 37 0.1846 0.0290 0.3243 5.3 5dqn:A
22 8cqv:A 202 27 0.1692 0.0545 0.4074 5.7 8cqv:B
23 6rxu:UT 2033 40 0.1846 0.0059 0.3000 6.9 6rxv:UT, 6rxx:UT, 6rxz:UT
24 6zu5:SD0 213 23 0.1538 0.0469 0.4348 8.3
25 6awn:A 544 28 0.1231 0.0147 0.2857 8.4 6awo:A, 6awp:A, 6awq:A, 8de3:A, 8de4:A, 6dzv:A, 6dzw:A, 6dzy:A, 6dzz:A, 5i6x:A, 5i71:A, 5i73:A, 5i74:A, 5i75:A, 7li6:A, 7li7:A, 7li9:A, 7lia:A, 7lwd:A, 7mgw:A, 7txt:S, 6vrh:A, 6vrk:A, 6vrl:A, 6w2b:A, 6w2c:A
26 8dvm:A 612 46 0.1846 0.0196 0.2609 8.6 4a0p:A, 8dvl:A, 8dvn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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