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BioLiP
>protein
PPGPPGPPGERGPPGGVGFPGPPGPPGPPG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9j26:A 30 30 1.0000 1.0000 1.0000 1.13e-08 9j26:F, 9j26:E
2 6x3m:F 366 28 0.5000 0.0410 0.5357 0.004 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
3 6x3m:F 366 27 0.4667 0.0383 0.5185 0.041 6wwx:A, 6wwx:B, 6wwx:C, 6wxa:B, 6wxa:C, 6x3m:B, 6x3m:A, 6x3m:C, 6x3m:D, 6x3m:E, 6x3m:H, 6x3m:I, 6x3m:G
4 6j0p:A 564 9 0.2667 0.0142 0.8889 0.52 6j0p:B, 6j1e:A, 6j1f:A, 6j1f:B, 6j1g:A, 6j1i:A, 6j1j:A
5 3d8b:A 281 16 0.3333 0.0356 0.6250 1.5 3d8b:B, 8r64:A
6 8r64:B 303 16 0.3333 0.0330 0.6250 1.5 8r64:C, 8r64:D, 8r64:E, 8r64:F
7 4l16:A 292 16 0.3333 0.0342 0.6250 1.5
8 7uqi:E 558 12 0.3000 0.0161 0.7500 2.5 7uqk:E
9 7uqj:A 585 12 0.3000 0.0154 0.7500 2.6 7uqi:A, 7uqi:B, 7uqi:C, 7uqi:D, 7uqj:C, 7uqj:D, 7uqj:E, 7uqj:F, 7uqj:B, 7uqk:A, 7uqk:B, 7uqk:C, 7uqk:D
10 4n7z:A 219 16 0.3000 0.0411 0.5625 3.5 6w3j:B
11 6jq0:A 516 12 0.3000 0.0174 0.7500 4.9
12 7upr:E 300 12 0.2667 0.0267 0.6667 7.3 7upr:C, 7upr:D, 7upr:B, 7upr:F, 7upt:A, 7upt:B, 7upt:C, 7upt:D, 7upt:E
13 6msg:F 395 12 0.2667 0.0203 0.6667 8.9 8cvt:F, 5gjq:M, 5gjr:M, 5gjr:0, 6msb:F, 6msh:F, 6msk:F, 7qxn:F, 7qxp:F, 7qxu:F, 7qxx:F, 7qya:F, 7qyb:F, 5vfp:F, 5vfq:F, 5vfr:F, 5vfs:F, 7w37:F, 7w3b:F, 7w3c:F, 7w3g:F, 7w3h:F, 7w3m:F, 6wjn:F
14 6fvt:K 394 12 0.2667 0.0203 0.6667 9.5 6ef0:K, 6ef1:K, 6ef2:K, 6ef3:K, 6fvu:K, 6fvv:K, 6fvw:K, 6fvx:K, 6fvy:K, 5mp9:K, 5mpa:K, 5mpb:K, 5mpc:K, 7qo4:K, 7qo5:K, 7qo6:K

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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