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BioLiP
>protein
PPGLCPRCKKGYHWKSECKSKFDKDGNPLPP

The query sequence (length=31) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dsv:A 31 31 1.0000 1.0000 1.0000 2.83e-17
2 1cl4:A 32 30 0.7097 0.6875 0.7333 8.85e-12
3 8opt:A 783 31 0.3871 0.0153 0.3871 0.13 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
4 5iz8:A 343 23 0.2258 0.0204 0.3043 0.97 5b6g:A, 7f6m:A, 7f7o:A, 8gsj:A, 5iz6:A, 5iz8:B, 5iz9:A, 5iza:A, 3nmx:A, 3nmx:B, 3nmx:C, 3qhe:A, 3qhe:C, 4yje:A, 4yjl:A, 4yjl:C, 4yjl:D, 4yjl:E, 4yjl:B, 4yjl:F, 4yk6:A, 5z8h:A
5 5o9z:H 413 22 0.3548 0.0266 0.5000 1.5 6ahd:L, 8h6e:4D, 8h6k:4D, 8h6l:4D, 2ozb:B, 2ozb:E, 8q7n:L, 8qo9:L, 8qoz:L, 8qp8:L, 8qp9:L, 8qpa:L, 8qpb:L, 8qpe:L, 8qpk:L, 6qw6:4C, 6qx9:4C, 8qxd:L, 8qzs:L, 8r08:L, 8r09:L, 8r0b:L, 8rm5:L, 3siu:B, 3siu:E, 3siv:B, 3siv:E, 3siv:H, 3siv:K, 8y6o:L
6 8r0a:L 292 23 0.3871 0.0411 0.5217 1.9 6ah0:L
7 6t40:A 271 32 0.3548 0.0406 0.3438 3.5 5osn:A, 6t48:A, 6t4c:A
8 3me4:A 169 12 0.2258 0.0414 0.5833 3.5 3me2:R, 3me4:B
9 5wch:A 350 24 0.3226 0.0286 0.4167 4.1 5wch:B, 5wch:C, 5wch:D
10 3k21:A 178 21 0.3226 0.0562 0.4762 5.4
11 6vpb:B 324 11 0.2581 0.0247 0.7273 5.6
12 6rwl:B 252 14 0.1613 0.0198 0.3571 7.1 6rwl:C, 6rwl:J, 6rwl:K, 6rwm:B, 6rwm:C, 6rwm:J, 6rwm:K, 6rwn:K, 6rwn:J, 6rwn:C, 6rwn:B, 6rwo:K, 6rwo:J, 6rwo:C, 6rwo:B
13 7p01:A 572 20 0.2903 0.0157 0.4500 7.3 7p01:B, 7p07:A, 7p07:B
14 8aaf:e 1527 32 0.3871 0.0079 0.3750 8.4 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
15 3th0:A 552 11 0.2581 0.0145 0.7273 8.5 1tyu:A, 1tyw:A, 1tyx:A
16 6rcl:B 148 24 0.3548 0.0743 0.4583 9.1 6j7y:A, 6j7z:A, 6j80:A, 6rcn:B
17 4a2c:A 346 23 0.3226 0.0289 0.4348 9.3 4a2c:B, 4uej:A, 4uej:B, 4uek:A, 4uek:B, 4ueo:A, 4ueo:B
18 1f1u:A 322 17 0.2581 0.0248 0.4706 9.9 1f1r:A, 1f1r:B, 1f1u:B, 1f1v:A, 1f1v:B
19 7fh6:A 653 10 0.2581 0.0123 0.8000 10.0 7fh7:A, 7fh8:A, 7ron:A, 7roo:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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