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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PNIKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIAS
ASRVTAVIPCFPYARQDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISE
WRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKEDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAIL
THGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSHVP

The query sequence (length=309) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8dbe:A 316 316 1.0000 0.9778 0.9778 0.0 8dbc:F, 8dbe:F, 8dbe:B, 8dbe:C, 8dbe:D, 8dbe:E, 8dbf:A, 8dbf:F, 8dbf:B, 8dbf:C, 8dbf:D, 8dbf:E, 8dbf:G, 8dbf:L, 8dbf:H, 8dbf:I, 8dbf:J, 8dbf:K, 8dbg:A, 8dbg:F, 8dbg:C, 8dbg:B, 8dbg:E, 8dbg:D, 8dbh:A, 8dbh:F, 8dbh:B, 8dbh:C, 8dbh:D, 8dbh:E, 8dbh:G, 8dbh:L, 8dbh:H, 8dbh:I, 8dbh:J, 8dbh:K, 8dbi:A, 8dbi:F, 8dbi:C, 8dbi:B, 8dbi:E, 8dbi:D, 8dbj:A, 8dbj:F, 8dbj:C, 8dbj:B, 8dbj:E, 8dbj:D, 8dbj:G, 8dbj:L, 8dbj:I, 8dbj:H, 8dbj:K, 8dbj:J, 8dbk:A, 8dbk:C, 8dbk:F, 8dbk:B, 8dbk:E, 8dbk:D, 8dbl:A, 8dbl:E, 8dbl:B, 8dbl:D, 8dbl:C, 8dbl:F, 8dbm:A, 8dbm:E, 8dbm:B, 8dbm:D, 8dbm:C, 8dbm:F, 8dbm:G, 8dbm:K, 8dbm:H, 8dbm:J, 8dbm:I, 8dbm:L, 8dbn:A, 8dbn:B, 8dbn:C, 8dbn:D, 8dbn:E, 8dbn:F, 8dbo:A, 8dbo:B, 8dbo:F, 8dbo:C, 8dbo:D, 8dbo:E, 2hcr:A, 2hcr:B, 7yk1:A, 7yk1:C, 7yk1:F, 7yk1:B, 7yk1:D, 7yk1:E
2 3dah:C 300 301 0.4628 0.4767 0.4751 3.73e-96 3dah:A, 3dah:B
3 6asv:C 311 314 0.4790 0.4759 0.4713 1.11e-94 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
4 1ibs:B 299 306 0.4757 0.4916 0.4804 8.91e-92 1dku:A, 1dku:B, 1ibs:A
5 7pn0:A 312 310 0.4628 0.4583 0.4613 3.30e-91 7pn0:B, 5t3o:A, 5t3o:B, 5t3o:C
6 6nfe:B 299 296 0.4304 0.4448 0.4493 9.38e-86 6nfe:A
7 4twb:A 278 285 0.2621 0.2914 0.2842 1.69e-30 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
8 1u9z:A 274 280 0.2492 0.2810 0.2750 2.76e-30 1u9z:B, 1u9z:C, 1u9z:D
9 3mbi:A 287 286 0.2460 0.2648 0.2657 9.78e-25 3lpn:A, 3lpn:B, 3lrt:A, 3lrt:B, 3mbi:C, 3mbi:B, 3mbi:D, 3nag:A, 3nag:B
10 1jlr:A 235 55 0.0518 0.0681 0.2909 0.12 1bd3:C, 1bd3:B, 1bd3:A, 1bd4:D, 1bd4:C, 1bd4:B, 1bd4:A, 1jlr:B, 1jlr:D, 1jlr:C, 1jls:B, 1jls:A, 1jls:D, 1jls:C, 1upf:D, 1upf:C, 1upf:B, 1upf:A, 1upu:D, 1upu:C, 1upu:B, 1upu:A
11 8b1t:B 1141 93 0.0841 0.0228 0.2796 0.43 8b1u:B, 7mr3:B, 6sjb:B, 6sje:B, 6sjf:B, 6sjg:B, 6t2u:B, 6t2v:B
12 8b1r:B 1170 93 0.0841 0.0222 0.2796 0.44 3k70:B, 3k70:E, 5ld2:B, 7mr4:B, 1w36:B, 1w36:E
13 4usz:A 415 41 0.0615 0.0458 0.4634 0.55 4cit:A
14 3qw4:C 447 57 0.0615 0.0425 0.3333 0.55 3qw4:B
15 4rqr:A 107 65 0.0518 0.1495 0.2462 0.97 1b4q:A
16 4lei:A 375 161 0.1068 0.0880 0.2050 2.2 4lei:B
17 6wn8:E 210 42 0.0453 0.0667 0.3333 2.4 6wn8:F, 6wn8:A, 6wn8:B
18 1c7i:A 483 63 0.0680 0.0435 0.3333 5.0 1qe3:A
19 8dt6:C 381 82 0.0809 0.0656 0.3049 5.1 8dt6:A, 8dt6:B, 8dt6:D
20 7fj8:A 395 76 0.0712 0.0557 0.2895 9.2 7fj9:A, 7fj9:B, 7fja:A, 7fja:B, 7fjb:A, 7fjb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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