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BioLiP
>protein
PMYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPNDFDFTVTGRGSPSAHH

The query sequence (length=77) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ogj:B 82 76 0.9870 0.9268 1.0000 5.84e-53 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
2 2moe:A 71 64 0.4545 0.4930 0.5469 1.19e-20 4lg7:A
3 3vxv:A 65 60 0.4545 0.5385 0.5833 1.51e-19 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
4 7mwm:A 74 70 0.4416 0.4595 0.4857 4.95e-12 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
5 2ky8:A 70 62 0.4026 0.4429 0.5000 6.88e-12
6 6ccg:A 72 63 0.3636 0.3889 0.4444 1.73e-11 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
7 1ig4:A 75 62 0.3506 0.3600 0.4355 6.51e-09 6d1t:A
8 7fef:A 48 45 0.2597 0.4167 0.4444 1.67e-05
9 5tky:A 597 40 0.2078 0.0268 0.4000 0.79 5tky:B
10 2en7:A 44 19 0.1429 0.2500 0.5789 1.2
11 5oyj:C 223 87 0.3377 0.1166 0.2989 1.6
12 8wwu:B 492 77 0.3117 0.0488 0.3117 2.5 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
13 6mfu:A 216 35 0.1818 0.0648 0.4000 2.7 6mfu:B, 6mfu:C, 6mfu:D
14 5oxt:A 327 42 0.1558 0.0367 0.2857 3.0 8av5:A, 6ekw:A, 6ekx:A, 6eky:A, 6ekz:A, 6el0:A, 6el4:A, 5oxt:B, 5oxt:C, 5oxu:A, 5oy1:A, 5oy2:A, 7pn4:A, 7pn5:A, 7pn6:A, 7pn7:A, 7pn8:A, 7pn9:A, 7pna:A, 2yor:B, 2yor:A, 2yp1:A, 2yp1:B, 2yp1:C, 2yp1:D
15 2qm1:B 325 20 0.1299 0.0308 0.5000 4.2 2qm1:A, 2qm1:C, 2qm1:D
16 5hgr:A 315 18 0.1169 0.0286 0.5000 4.6 5hgr:B
17 5nhk:B 132 37 0.1558 0.0909 0.3243 7.0 5nbc:A, 5nbc:B, 5nbc:C, 5nbc:D, 5nhk:A, 5nhk:C, 5nhk:D
18 5x1y:B 454 27 0.1429 0.0242 0.4074 7.8 5x1y:A, 5x1y:C, 5x1y:D, 5x1y:E, 5x1y:F
19 7ekr:B 309 18 0.1169 0.0291 0.5000 8.7 7ekr:A
20 1svu:A 307 28 0.1558 0.0391 0.4286 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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