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BioLiP
>protein
PMRVLKYAILGLLRKGELSGYDITSYFKEELGQFWSAKHSQIYPELKKLTDEGFITFRTTIQGTKLEKKMYTLTDSGKQE
LHDWLIRHQPIPETVKDEFMLKAYFISSLSRQEASDLFTDQLLKRKAKLSDLQGSYEKLMAPMSFSSPDFGHYLVLTKAL
EREKNYVSWLESILAMID

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5x11:E 181 180 0.9944 0.9779 0.9833 1.34e-127 5x11:A, 5x11:B, 5x11:D, 5x11:C, 5x11:F, 5x11:H, 5x14:A
2 5z7b:B 197 180 0.2528 0.2284 0.2500 3.11e-07 6lg2:A, 6lg2:B, 5z7b:A
3 1q1w:A 422 71 0.0899 0.0379 0.2254 0.23 3lb8:A, 3lb8:B, 1q1r:A, 1q1r:B, 1q1w:B
4 2fkz:A 155 99 0.1573 0.1806 0.2828 0.68 2fkz:B, 2fkz:D, 2fkz:C, 2fkz:E, 2fkz:F, 2fkz:G, 2fkz:H, 2fl0:A, 2fl0:F, 2fl0:B, 2fl0:D, 2fl0:C, 2fl0:E, 2fl0:G, 2fl0:H, 1sof:A, 1sof:B, 1sof:C, 1sof:D, 1sof:E, 1sof:F, 1sof:G, 1sof:H
5 4lt6:A 467 52 0.0899 0.0343 0.3077 0.88 4lt6:B
6 5ven:A 382 69 0.1011 0.0471 0.2609 1.0 5ven:B, 5veo:A
7 7oqh:D 364 55 0.0787 0.0385 0.2545 5.3 7oqh:A, 7oqh:B, 7oqh:C, 7oqh:E, 7oqh:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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