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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PMRSEPLRKKKKVDPKKDQEAKERLKRKIRKLEKATQLIPIEDFITPLKFLDKARERPQVELTFEETERRALLLKKWSLY
KQQERKMERDTIRAMLEAQQEALEELQLESPKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYTQVEF
KR

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a5f:A 162 162 1.0000 1.0000 1.0000 6.14e-114 7a5g:A, 7a5h:8, 7a5i:83, 7a5j:8, 7a5k:A, 8any:8, 6i9r:8, 3j7y:8, 3j9m:8, 8k2a:Ln, 8k2b:Ln, 7l08:8, 7l20:8, 6nu2:8, 6nu3:8, 7o9k:8, 7o9m:8, 7odr:8, 7ods:8, 7odt:8, 7of0:8, 7of2:8, 7of3:8, 7of4:8, 7of5:8, 7of6:8, 7of7:8, 7og4:8, 7oi7:8, 7oi8:8, 7oi9:8, 7oia:8, 7oib:8, 7oic:8, 7oid:8, 7oie:8, 8oir:Bp, 8oit:Bp, 5ool:8, 5oom:8, 7pd3:8, 8pk0:8, 7po4:8, 7qi4:8, 7qi5:8, 7qi6:8, 8qsj:8, 8qu5:8, 6vlz:8, 6vmi:8, 8xt0:Ln, 8xt1:Ln, 8xt2:Ln, 8xt3:Ln, 6zm5:8, 6zm6:8, 6zs9:8, 6zsa:8, 6zsb:8, 6zsc:8, 6zsd:8, 6zse:8, 6zsg:8
2 8oin:Bp 143 143 0.6667 0.7552 0.7552 6.24e-75 5aj4:Bd, 6gaw:Bd, 6gb2:Bd, 7nqh:Bd, 7nql:Bd, 7nsh:Bd, 7nsi:Bd, 7nsj:Bd, 8oiq:Bp, 6ydp:Bd, 6ydw:Bd
3 3j6b:2 113 95 0.1543 0.2212 0.2632 0.12 5mrc:2, 5mre:2, 5mrf:2
4 1eu4:A 204 70 0.0988 0.0784 0.2286 0.16
5 4aos:A 523 79 0.1481 0.0459 0.3038 0.45 4aox:A, 4ap1:A, 4ap3:A
6 3ge1:A 499 33 0.0802 0.0261 0.3939 1.3 3ge1:B, 3ge1:C, 3ge1:D
7 4obi:A 87 26 0.0679 0.1264 0.4231 2.1
8 4hka:A 345 40 0.0864 0.0406 0.3500 3.1
9 8fl2:NC 511 39 0.0741 0.0235 0.3077 4.8 8fkz:NC, 8fl0:NC, 8fl3:NC, 8fl4:NC, 8idt:A, 8idy:A, 8ie3:A, 8ine:A, 8inf:A, 8ink:w, 8ipd:w, 8ipx:w, 8ipy:w, 8ir1:w, 8ir3:w
10 4xzp:A 148 26 0.0741 0.0811 0.4615 8.8 5duu:A, 5duu:B, 5duu:C, 5duu:D, 5duv:A, 5duv:B, 5duv:C, 5duv:D, 5duw:A, 5duw:B, 5duw:C, 5duw:D, 5dux:B, 5dux:D, 5dux:A, 5dux:C
11 7ed6:A 203 80 0.1667 0.1330 0.3375 9.8 7ed6:B, 7ed9:A, 7ed9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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