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BioLiP
>protein
PMIVELPLEKIRRPLMRTRSNDQNKVKELMDSIRQIGLQVPIDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKGTK
ETLRHHLRL

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ky4:A 89 89 1.0000 1.0000 1.0000 2.51e-62
2 2b6f:A 121 89 0.3933 0.2893 0.3933 3.50e-11 3cyi:A, 3hy2:X, 3hy2:Y, 7lj1:c, 7lj1:g, 1xw3:A, 1xw4:X
3 4umk:D 176 64 0.2022 0.1023 0.2812 0.001 4umk:A
4 1vz0:B 192 78 0.2921 0.1354 0.3333 0.004 1vz0:A, 1vz0:C, 1vz0:D
5 6t1f:C 195 77 0.2697 0.1231 0.3117 0.005 7bm8:A, 7bm8:B, 6s6h:A, 6t1f:A, 6t1f:B, 6t1f:D
6 7vjt:A 278 32 0.1236 0.0396 0.3438 0.24 7m7v:A, 7m7v:B, 8q0t:A, 8q0t:B, 8q0u:A, 8q0u:B, 8q17:A, 8q17:B, 8tqg:A, 8tqv:A, 8tqv:B, 8tr4:A, 8tr4:B, 8try:A, 8try:B, 5v3w:A, 5v3w:B, 5v3x:A, 5v3x:B, 5v3y:A, 5v3y:B, 5v40:A, 5v40:B, 5v41:A, 5v42:A, 5v42:B, 7vjt:B
7 7lui:A 180 53 0.1798 0.0889 0.3019 2.1
8 2wta:A 212 47 0.1910 0.0802 0.3617 2.2 2wt9:A, 2wt9:B
9 9bed:A 74 18 0.1236 0.1486 0.6111 5.6 9beb:A, 9beb:E, 9beb:C, 9beb:F, 9beb:B, 9beb:D, 9bed:D, 9bed:C, 9bed:F, 9bed:B, 9bed:E, 9bel:A, 9bel:C, 9bel:B, 9bel:E, 9bel:D, 9bel:F, 9bem:A, 9bem:C, 9bem:B, 9bem:E, 9bem:F, 9bem:D, 9beo:A, 9beo:E, 9beo:C, 9beo:B, 9beo:D, 9beo:F, 9d2c:A, 9d2c:D, 9d2c:B, 9d2c:C, 9d2c:E, 9d2c:F, 9d2c:H, 9d2c:K, 9d2c:J, 9d2c:I, 9d2c:L, 9d2c:M
10 5wti:Z 982 51 0.2247 0.0204 0.3922 7.4
11 4ki0:F 490 47 0.1573 0.0286 0.2979 7.5 4khz:F, 3puv:F, 3puw:F, 3pux:F, 3puy:F, 3puz:F, 3pv0:F, 2r6g:F, 3rlf:F
12 8adq:A 252 32 0.1124 0.0397 0.3125 7.5 7nnk:A, 7nnk:B, 7nr1:A, 7nuj:A, 7nuj:B, 7o5r:A, 7o5r:B, 7o5v:AAA, 7o5v:BBB, 7o5w:AAA, 7o5w:BBB, 7o87:AAA, 7o87:BBB, 7o9r:AAA, 7o9r:BBB, 7obu:A, 7obu:B, 6r62:A
13 8bpo:t2 418 29 0.1348 0.0287 0.4138 8.2
14 4v8m:BK 212 47 0.1573 0.0660 0.2979 8.3 8ova:BK, 8ove:BK

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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