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BioLiP
>protein
PMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVEHGEHLPDYVPGN

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ej3:C 64 64 1.0000 1.0000 1.0000 9.97e-44 3ej3:A, 3ej3:E, 3ej3:G, 3ej3:I, 3ej3:K
2 2opa:A 61 59 0.3281 0.3443 0.3559 1.15e-06
3 7ms8:A 146 56 0.2969 0.1301 0.3393 0.001 7ms1:A, 7ms3:A, 7ms9:A, 7ms9:B, 7ms9:H, 7ms9:I, 7ms9:K
4 4xjj:A 105 57 0.2812 0.1714 0.3158 0.18 4p7u:A
5 7de4:A 550 15 0.1406 0.0164 0.6000 2.1
6 4lho:A 131 42 0.1719 0.0840 0.2619 2.1 4lho:B, 4lho:C, 4lho:D, 4lho:E, 3mlc:A, 3mlc:B, 3mlc:C, 3mlc:D, 3mlc:E
7 1bjp:A 62 50 0.2188 0.2258 0.2800 2.5 6bgn:A, 6bgn:B, 6bgn:C, 6bgn:D, 6bgn:E, 6bgn:F, 6bgn:I, 6bgn:G, 6bgn:H, 6bgn:J, 6bgn:K, 6bgn:L, 6bgn:O, 6bgn:M, 6bgn:N, 1bjp:B, 1bjp:C, 1bjp:D, 1bjp:E, 5clo:M, 5clo:N, 5clo:O, 6ghw:C, 5tig:A, 5tig:B, 5tig:C, 5tig:F, 5tig:O, 5tig:P, 5tig:Q
8 2yd8:A 198 28 0.1562 0.0505 0.3571 3.1
9 1e1d:A 553 21 0.1562 0.0181 0.4762 3.5 1e2u:A, 1e9v:A, 1gnt:A, 1oa1:A, 1w9m:A
10 2g37:B 300 24 0.1562 0.0333 0.4167 4.1 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
11 3r5r:A 109 27 0.1406 0.0826 0.3333 4.4 3r5r:B, 3r5r:C, 3r5r:D, 3r5r:E, 3r5w:A, 3r5w:M, 3r5w:B, 3r5w:N, 3r5w:C, 3r5w:K, 3r5w:D, 3r5w:L, 3r5w:E, 3r5w:O
12 3upl:A 437 46 0.2500 0.0366 0.3478 5.0 3upl:B, 3upy:A, 3upy:B
13 4m7x:A 273 52 0.2656 0.0623 0.3269 5.4 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
14 1f2i:G 66 19 0.1406 0.1364 0.4737 5.8 1f2i:H, 1f2i:I, 1f2i:J, 1f2i:K, 1f2i:L
15 3p3c:A 272 28 0.1719 0.0404 0.3929 6.7 5dro:A, 5dro:B, 5drp:A, 5drp:B, 2go3:A, 2go3:B, 2go4:A, 2go4:B, 2ier:A, 2ier:B, 2ies:A, 2ies:B, 6ih0:A, 2j65:A, 2j65:B, 2jt2:A, 2o3z:A, 2o3z:B, 4oze:A, 4oze:B, 1p42:A, 1p42:B, 3p76:A, 4u3b:A, 4u3d:A, 5u86:A, 1xxe:A, 1yh8:A, 1yh8:B, 1yhc:A, 1yhc:B
16 6bzr:B 237 23 0.1719 0.0464 0.4783 6.8 6bzr:A
17 3eyf:B 218 20 0.1562 0.0459 0.5000 8.2 3eyf:D
18 1p47:A 87 19 0.1406 0.1034 0.4737 8.6 1a1f:A, 1a1g:A, 1a1h:A, 1a1i:A, 1a1j:A, 1a1k:A, 1a1l:A, 1aay:A, 1jk1:A, 1jk2:A, 1p47:B, 4r2a:A, 4r2c:A, 4r2d:A, 4x9j:A, 1zaa:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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