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BioLiP Library
>protein
PMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVEHGEHLPDYVP

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ej3:C 64 62 1.0000 0.9688 1.0000 4.47e-42 3ej3:A, 3ej3:E, 3ej3:G, 3ej3:I, 3ej3:K
2 2opa:A 61 59 0.3387 0.3443 0.3559 1.10e-06
3 7ms8:A 146 56 0.3065 0.1301 0.3393 0.001 7ms1:A, 7ms3:A, 7ms9:A, 7ms9:B, 7ms9:H, 7ms9:I, 7ms9:K
4 4xjj:A 105 57 0.2903 0.1714 0.3158 0.20 4p7u:A
5 7de4:A 550 15 0.1452 0.0164 0.6000 1.9
6 4lho:A 131 59 0.2419 0.1145 0.2542 2.6 4lho:B, 4lho:C, 4lho:D, 4lho:E, 3mlc:A, 3mlc:B, 3mlc:C, 3mlc:D, 3mlc:E
7 2yd8:A 198 28 0.1613 0.0505 0.3571 2.9
8 1bjp:A 62 55 0.2581 0.2581 0.2909 2.9 6bgn:A, 6bgn:B, 6bgn:C, 6bgn:D, 6bgn:E, 6bgn:F, 6bgn:I, 6bgn:G, 6bgn:H, 6bgn:J, 6bgn:K, 6bgn:L, 6bgn:O, 6bgn:M, 6bgn:N, 1bjp:B, 1bjp:C, 1bjp:D, 1bjp:E, 5clo:M, 5clo:N, 5clo:O, 6ghw:C, 5tig:A, 5tig:B, 5tig:C, 5tig:F, 5tig:O, 5tig:P, 5tig:Q
9 1e1d:A 553 20 0.1613 0.0181 0.5000 3.1 1e2u:A, 1e9v:A, 1gnt:A, 1oa1:A, 1w9m:A
10 3r5r:A 109 27 0.1452 0.0826 0.3333 3.8 3r5r:B, 3r5r:C, 3r5r:D, 3r5r:E, 3r5w:A, 3r5w:M, 3r5w:B, 3r5w:N, 3r5w:C, 3r5w:K, 3r5w:D, 3r5w:L, 3r5w:E, 3r5w:O
11 2g37:B 300 24 0.1613 0.0333 0.4167 4.5 2ekg:A, 2ekg:B, 2g37:A, 5m42:A
12 3upl:A 437 46 0.2581 0.0366 0.3478 4.6 3upl:B, 3upy:A, 3upy:B
13 3p3c:A 272 28 0.1774 0.0404 0.3929 5.7 5dro:A, 5dro:B, 5drp:A, 5drp:B, 2go3:A, 2go3:B, 2go4:A, 2go4:B, 2ier:A, 2ier:B, 2ies:A, 2ies:B, 6ih0:A, 2j65:A, 2j65:B, 2jt2:A, 2o3z:A, 2o3z:B, 4oze:A, 4oze:B, 1p42:A, 1p42:B, 3p76:A, 4u3b:A, 4u3d:A, 5u86:A, 1xxe:A, 1yh8:A, 1yh8:B, 1yhc:A, 1yhc:B
14 1f2i:G 66 19 0.1452 0.1364 0.4737 5.8 1f2i:H, 1f2i:I, 1f2i:J, 1f2i:K, 1f2i:L
15 6bzr:B 237 23 0.1774 0.0464 0.4783 6.6 6bzr:A
16 1p47:A 87 19 0.1452 0.1034 0.4737 8.8 1a1f:A, 1a1g:A, 1a1h:A, 1a1i:A, 1a1j:A, 1a1k:A, 1a1l:A, 1aay:A, 1jk1:A, 1jk2:A, 1p47:B, 4r2a:A, 4r2c:A, 4r2d:A, 4x9j:A, 1zaa:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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