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BioLiP
>protein
PLLAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCI
MSTIGGDNSNSLLPFLDYDAIIANPKIIIGYADTTALLAGIYAKTGLITFYGPALIPSFGEHPPLVDITYESFIKILTRK
QSGIYTYTLPEKWSDESINWNENKILRPKKLYKNNCAFYGSGKVEGRVIGGNLNTLTGIWGSEWMPEIRNGDILFIEDSR
KSIATVERLFSMLKLNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVLDGKQIPVLDGFDCSHTHPMLTLPLGVKLAI
DFDNKNISITEQYLS

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4iix:A 338 335 1.0000 0.9911 1.0000 0.0 4iix:B, 4iiy:A, 4iiy:B, 3tlb:A, 3tlb:B, 3tlc:A, 3tlc:B, 3tle:A, 3tle:B, 3tlz:A, 3tlz:B
2 4jvo:A 336 331 0.5731 0.5714 0.5801 4.97e-137 4jvo:B, 5k99:A, 5k99:B, 4mi1:A, 4mi1:B, 3t5m:A, 3t5m:B, 3tyx:A, 3tyx:B, 3u1b:A, 3u1b:B
3 4inj:A 326 326 0.3373 0.3466 0.3466 4.05e-45 4inj:B
4 5fd8:A 330 339 0.3194 0.3242 0.3156 1.38e-41 5fd8:B, 5usd:A, 5usd:B, 5usd:C, 5usd:D
5 5f5x:A 344 338 0.2925 0.2849 0.2899 2.33e-28 5f5x:B, 5jyb:A
6 5z01:A 305 330 0.2687 0.2951 0.2727 2.40e-23
7 4eys:A 343 284 0.1970 0.1924 0.2324 9.02e-12
8 1ksi:A 642 72 0.0597 0.0312 0.2778 1.3 1ksi:B, 1w2z:A, 1w2z:B, 1w2z:C, 1w2z:D
9 2o01:L 164 43 0.0507 0.1037 0.3953 1.6 7wfd:AL, 7wg5:AL, 2wsc:L, 2wse:L, 2wsf:L
10 8by2:A 548 39 0.0358 0.0219 0.3077 2.0 8bxg:A, 8bxg:B, 8by2:B, 9emb:A, 9emb:B
11 5xxu:L 147 54 0.0418 0.0952 0.2593 2.8
12 8esq:K 251 54 0.0567 0.0757 0.3519 3.8 8esr:K, 8etg:K, 8eth:K, 8eti:K, 8eup:K, 8euy:K, 8ev3:K
13 4dnr:A 1031 64 0.0507 0.0165 0.2656 4.5 3k0i:A, 7kf6:A, 7kf6:B, 7kf6:C, 7kf7:B, 7kf8:B, 7kf8:C, 3t53:A
14 6htw:B 385 119 0.0836 0.0727 0.2353 6.8 6htw:H, 6i8r:A
15 4ir7:A 508 92 0.0806 0.0531 0.2935 7.5
16 2exh:A 533 64 0.0448 0.0281 0.2344 7.7 2exh:B, 2exh:C, 2exh:D, 2exi:A, 2exi:B, 2exi:C, 2exi:D, 2exj:A, 2exj:B, 2exj:C, 2exj:D, 2exk:A, 2exk:B, 2exk:C, 2exk:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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