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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLKEKKLLEVKLGELPSWILMRDFTPSGIAGAFQRGYYRYYNKYVNVKKGSIAGLSMVLAAYVFLNYCRSYKELKHERLR
KYH

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6j54:f 87 83 0.9277 0.8851 0.9277 1.30e-54 6zbb:f, 6zmr:f, 6zpo:f, 6zqm:f, 6zqn:f
2 6td5:I 219 38 0.1687 0.0639 0.3684 1.0 6td5:i
3 7dzz:B 268 18 0.1084 0.0336 0.5000 2.8 7dt0:A, 7dt0:B, 7dt0:C, 7dt0:D, 7dt0:E, 7dt0:F, 7dt0:G, 7dzz:A, 7e00:A, 7e00:B, 7e01:A, 7e06:A, 7e06:B, 7e07:A, 7e07:B, 7e08:A, 7e09:A, 8h7v:A, 8h7v:B, 8h7y:A, 8h7y:B, 8h81:A, 8h85:A
4 7dt0:H 241 18 0.1084 0.0373 0.5000 2.9
5 1m74:A 802 41 0.1807 0.0187 0.3659 3.9 2ibm:A, 6itc:A, 3jv2:A, 3jv2:B, 1tf2:A, 7xha:A, 7xhb:A
6 5eul:A 746 41 0.1807 0.0201 0.3659 4.1
7 6wq2:A 154 62 0.2169 0.1169 0.2903 7.6 6wq2:B, 6wq2:C, 6wq2:D, 6wq2:E, 6wq2:F, 6wq2:G, 6wq2:H, 6wq2:I, 6wq2:J, 6wq2:K, 6wq2:L, 6wq2:M, 6wq2:N, 6wq2:P, 6wq2:R, 6wq2:T
8 3e80:C 747 30 0.1325 0.0147 0.3667 9.0 3e7j:A, 3e7j:B, 3e80:A, 3e80:B, 2fuq:B, 2fuq:A, 2fut:A, 2fut:B
9 7cn3:C 349 20 0.1205 0.0287 0.5000 9.3 7cn3:A, 7cn3:B, 7cn3:D, 7cn3:E, 7cn3:F, 7cnt:A, 7cnt:B, 7cnt:C, 7cnt:D, 7cnt:E, 7cnt:F, 7cup:A, 7cup:B, 7cup:C, 7cup:D, 7cup:E, 7cup:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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