Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PLDFTQYAKNMRKDLSNQDICLEDGALNHSYFLTKKGQYWTPLNQKALQRGIELFGVGNWKEINYDEFSGKANIVELELR
TCMILGINDITEYYGKKISEEEQEEIKKSNIAKGKKENKLKDNIYQKLQQ

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7f4l:B 130 130 1.0000 1.0000 1.0000 2.16e-93 7f4m:B, 7f4n:B
2 1vfc:A 63 68 0.1769 0.3651 0.3382 0.037 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
3 1qgn:A 398 35 0.1231 0.0402 0.4571 0.97 1i41:A, 1i41:C, 1i41:B, 1i41:D, 1i41:E, 1i41:G, 1i41:F, 1i41:H, 1i41:I, 1i41:K, 1i41:J, 1i41:L, 1i43:A, 1i43:C, 1i43:B, 1i43:D, 1i43:E, 1i43:G, 1i43:F, 1i43:H, 1i43:I, 1i43:K, 1i43:J, 1i43:L, 1i48:A, 1i48:C, 1i48:B, 1i48:D, 1i48:E, 1i48:G, 1i48:F, 1i48:H, 1i48:I, 1i48:K, 1i48:J, 1i48:L, 1qgn:C, 1qgn:B, 1qgn:D, 1qgn:E, 1qgn:G, 1qgn:F, 1qgn:H
4 1hqv:A 178 31 0.0846 0.0618 0.3548 1.7 3aaj:A, 3aaj:B, 3aak:A, 5gqq:C, 5gqq:D, 5jjg:A, 3wxa:A, 3wxa:B, 2zn8:A, 2zn9:A, 2zn9:B, 2zne:A, 2zne:B, 2zrs:A, 2zrs:B, 2zrs:C, 2zrs:D, 2zrs:E, 2zrs:F, 2zrs:G, 2zrs:H, 2zrt:A, 2zrt:B, 2zrt:C, 2zrt:D, 2zrt:E, 2zrt:F, 2zrt:G, 2zrt:H
5 3msd:A 330 58 0.1231 0.0485 0.2759 2.3 3msd:B, 3msg:A, 3msg:B, 3mua:A, 3mua:B, 3mui:A, 3mui:B
6 8bqa:AAA 298 43 0.1231 0.0537 0.3721 5.0
7 8ox1:M 65 30 0.0846 0.1692 0.3667 5.5 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
8 6k13:A 332 34 0.0923 0.0361 0.3529 5.8 6k13:B
9 5xxb:C 394 25 0.0769 0.0254 0.4000 6.9
10 7c4p:A 55 36 0.0769 0.1818 0.2778 7.3 7c4p:B, 7c4q:A, 7c4q:B, 7c4r:A, 7c4r:B
11 8uru:F 51 60 0.1308 0.3333 0.2833 9.0 8urq:F

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218