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BioLiP
>protein
PKYDTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLD
NSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSIT
FNFSWSKTYENVEFETTSFTFSYIAQE

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4k6u:B 187 187 1.0000 1.0000 1.0000 3.19e-138 4k6t:A, 4k6t:B, 4k6t:C, 4k6t:E, 4k6t:F, 4k6t:G, 4k6u:A, 4k6u:C, 4k6v:A, 4k6v:B, 4k6v:C, 4k6w:A, 4k6w:B, 4k6w:C, 3n0i:A, 3n0i:B, 3qnd:A, 3qnd:B, 3qnd:C, 3qnd:E, 3qnd:F, 3qnd:G, 1uxa:A, 1uxa:B, 1uxa:C, 1uxb:A, 1uxb:B, 1uxb:C, 1uxe:A, 1uxe:B, 2wbw:A, 2wgt:A, 2wgt:B, 2wgt:C, 2wgu:A, 2wgu:B, 2wgu:C, 4xqa:A, 4xqa:B, 4xqa:C, 4xqb:A, 4xqb:B, 4xqb:C
2 8ofv:F 175 182 0.7914 0.8457 0.8132 3.48e-105 8ofv:L
3 8ofr:B 186 184 0.6310 0.6344 0.6413 2.01e-80 8ofr:A, 8ofr:C, 8ofr:D, 8ofr:E, 8ofr:F, 8ofr:G, 8ofr:H, 8ofr:I, 8ofr:J, 8ofr:K, 8ofr:L, 8ofr:M, 8ofr:N, 8ofr:O, 8ofr:P, 8ofr:Q, 8ofr:R, 8ofr:S, 8ofr:T, 8ofr:U, 8ofr:V, 8ofr:W, 8ofr:X
4 6stt:A 178 184 0.6417 0.6742 0.6522 1.46e-78 6stt:B
5 6qu6:A 189 186 0.5668 0.5608 0.5699 1.54e-71 6fjo:A, 6qu8:A
6 6stu:A 204 196 0.5615 0.5147 0.5357 9.77e-69 8ofs:A, 8ofs:B, 8ofs:C
7 7op2:A 187 189 0.4492 0.4492 0.4444 1.78e-48 7op2:D, 7op2:G
8 6g47:A 171 182 0.3316 0.3626 0.3407 3.55e-23 6g47:C, 4xl8:A, 4xl8:B, 4xl8:C
9 2wbv:B 186 189 0.2406 0.2419 0.2381 1.84e-04 2w9l:C, 2w9l:D, 2w9l:E, 2w9l:F, 2w9l:H, 2w9l:I, 2w9l:L, 2w9l:M, 2w9l:N, 2w9l:Q, 2w9l:R, 2w9l:S, 2wbv:D, 2wbv:A, 2wbv:C, 2wbv:E, 2wbv:F
10 8tj5:M 1659 117 0.1604 0.0181 0.2564 0.13 8tj5:O
11 3td9:A 350 61 0.0963 0.0514 0.2951 3.4
12 2fsh:A 691 22 0.0588 0.0159 0.5000 3.8 3bxz:A, 3bxz:B, 2fsg:A, 2fsi:A
13 2fsh:B 722 22 0.0588 0.0152 0.5000 3.8
14 2fsi:B 748 22 0.0588 0.0147 0.5000 3.9 2fsg:B
15 6s0k:h 838 22 0.0588 0.0131 0.5000 3.9 5k9t:A, 2vda:A
16 5m1d:A 469 25 0.0535 0.0213 0.4000 4.4 5m1d:B, 5m1d:C, 5m1e:A, 5m1e:B, 5m1e:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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