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BioLiP
>protein
PKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVSFCEFCPHSFCKDHEKGALV
PSALEGRLCCSEHDPMAP

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gnd:C 107 98 1.0000 0.9159 1.0000 8.90e-70 4gnd:A, 4gne:A, 4gnf:A, 4gng:A, 4gng:D
2 2naa:A 94 90 0.5918 0.6170 0.6444 3.40e-38
3 2l5u:A 61 46 0.2347 0.3770 0.5000 4.46e-10
4 2ke1:A 66 47 0.2449 0.3636 0.5106 1.89e-08 2kft:A, 1xwh:A
5 2puy:B 60 47 0.2245 0.3667 0.4681 5.09e-07 2puy:A
6 1mm3:A 61 46 0.2245 0.3607 0.4783 1.11e-06
7 2yql:A 56 46 0.2245 0.3929 0.4783 1.22e-06
8 3o36:A 184 88 0.3163 0.1685 0.3523 1.23e-06 7b9x:A, 5h1t:A, 5h1t:B, 5h1t:C, 5h1t:D, 5h1u:B, 5h1u:A, 5h1u:C, 5h1u:D, 5h1v:A, 5h1v:B, 3o33:A, 3o33:B, 3o33:C, 3o33:D, 3o34:A, 3o35:B, 3o35:A, 3o36:B, 3o37:A, 3o37:B, 3o37:C, 3o37:D, 4yab:A, 4yab:B, 4yad:A, 4yad:B, 4yat:A, 4yat:B, 4yax:A, 4yax:B, 4ybm:A, 4ybm:B, 4ybs:A, 4ybt:A, 4yc9:A, 4zql:A, 4zql:B
9 1x4i:A 70 34 0.1837 0.2571 0.5294 2.80e-06 7zmx:A, 7zmx:B
10 8hxx:N 375 51 0.2041 0.0533 0.3922 3.16e-06 8hxy:N, 8hy0:N, 8i3f:B, 8jho:N, 8tof:G, 8w9c:E, 8w9d:E, 8w9e:E, 8w9f:E
11 6ryr:W 708 46 0.2347 0.0325 0.5000 3.23e-06 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
12 6q3m:C 219 46 0.2347 0.1050 0.5000 4.48e-06 6q3m:A, 6q3m:B
13 6guu:B 204 46 0.2449 0.1176 0.5217 4.59e-06 6guu:A
14 8kd6:E 301 54 0.2143 0.0698 0.3889 4.67e-06 8kd2:E
15 8ihn:M 357 51 0.2041 0.0560 0.3922 5.20e-06 8kd4:E
16 7yi2:D 321 51 0.2041 0.0623 0.3922 9.64e-06 7yi0:D, 7yi3:D, 7yi4:D, 7yi5:D
17 6ieu:A 170 49 0.2347 0.1353 0.4694 2.52e-05 6iet:A
18 7mju:A 184 51 0.2143 0.1141 0.4118 7.36e-05 5dag:A, 5dah:B, 5dah:A
19 1wes:A 71 34 0.1633 0.2254 0.4706 7.77e-05 2g6q:A
20 7ebk:A 183 45 0.2245 0.1202 0.4889 1.15e-04 7ebj:A
21 5b73:A 313 56 0.2245 0.0703 0.3929 1.38e-04 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
22 2mum:A 50 43 0.2041 0.4000 0.4651 1.78e-04
23 1f62:A 51 43 0.1837 0.3529 0.4186 3.66e-04
24 1weu:A 91 34 0.1633 0.1758 0.4706 3.77e-04 3c6w:A, 3c6w:C, 2k1j:A, 2m1r:A, 2pnx:A, 2pnx:C, 2vnf:A, 2vnf:C, 1wen:A
25 2qic:A 51 34 0.1531 0.2941 0.4412 3.90e-04
26 8w9c:F 156 51 0.2041 0.1282 0.3922 6.80e-04 8hxx:P, 8hy0:P, 8jho:P, 8w9d:F, 8w9e:F, 8w9f:F
27 3u5m:E 173 47 0.2041 0.1156 0.4255 6.82e-04
28 3u5o:C 195 47 0.2041 0.1026 0.4255 7.85e-04 8bd8:A, 8bd9:A, 8bdy:A, 5mr8:A, 3u5m:A, 3u5m:B, 3u5m:C, 3u5m:D, 3u5m:F, 3u5m:G, 3u5m:H, 3u5m:I, 3u5m:K, 3u5m:J, 3u5m:L, 3u5n:A, 3u5n:B, 3u5o:A, 3u5o:B, 3u5o:D, 3u5o:E, 3u5o:F, 3u5o:G, 3u5o:H, 3u5p:A, 3u5p:B, 3u5p:C, 3u5p:D, 3u5p:E, 3u5p:F, 3u5p:G, 3u5p:H, 7zdd:A
29 5vab:A 54 50 0.2143 0.3889 0.4200 0.002
30 2jmi:A 60 44 0.1939 0.3167 0.4318 0.006 2jmj:A
31 5szb:A 115 44 0.1837 0.1565 0.4091 0.008 5i3l:A, 5i3l:B, 2kwj:A, 2kwk:A, 2kwn:A, 2kwo:A, 5szc:A
32 7yi0:F 120 48 0.1837 0.1500 0.3750 0.017
33 5b79:A 118 43 0.1531 0.1271 0.3488 0.031 5vdc:A
34 8bpb:C 126 48 0.1939 0.1508 0.3958 0.040 8bpc:C
35 8bpa:C 213 51 0.2143 0.0986 0.4118 0.042 8c60:C
36 8bpa:C 213 48 0.1939 0.0892 0.3958 0.059 8c60:C
37 7zu8:A 336 51 0.2041 0.0595 0.3922 0.043 7zva:A, 7zvb:A, 7zvc:A
38 2mny:A 55 45 0.1837 0.3273 0.4000 0.18 2mnz:A
39 8ge0:A 188 69 0.2143 0.1117 0.3043 0.45 8gdx:A, 8ge0:B, 8ge0:C
40 7klo:A 59 45 0.1837 0.3051 0.4000 0.58 7klr:A
41 2miq:A 94 41 0.1633 0.1702 0.3902 1.5
42 8i02:F 235 45 0.1939 0.0809 0.4222 1.6
43 2e6r:A 92 59 0.2143 0.2283 0.3559 2.4
44 6g8r:B 164 44 0.1735 0.1037 0.3864 3.7 2md7:B, 2md8:C
45 3n9m:A 503 57 0.1633 0.0318 0.2807 6.6 3n9l:A, 3n9m:C, 3n9n:A, 3n9o:A, 3n9p:A, 3n9q:A, 3puq:A, 3puq:C, 3pur:A, 3pur:C
46 1lh0:A 213 21 0.1224 0.0563 0.5714 6.6 1lh0:B, 1opr:A, 1oro:A, 1sto:A
47 6jij:C 298 34 0.1224 0.0403 0.3529 6.9 6jij:B, 6jij:A
48 2vp7:A 66 33 0.0918 0.1364 0.2727 8.0 2dx8:A, 2dx8:B, 2vpb:A, 2vpd:A, 2vpd:C, 2vpe:C, 2vpe:A, 2vpg:A, 2vpg:C, 2yyr:A, 2yyr:B
49 5hh7:A 192 41 0.1633 0.0833 0.3902 8.5
50 4tvr:A 222 31 0.1531 0.0676 0.4839 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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