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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PKMKTHKMAKRRIKITGTGKVMAFKSGKRHQNTGKSGDEIRGKGKGFVLAKAEWARMKLMLPR

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5dm6:3 65 63 1.0000 0.9692 1.0000 3.22e-40 7a0r:3, 7a0s:3, 7a18:3, 3cf5:3, 3dll:3, 5dm7:3, 4ioa:3, 4ioc:3, 5jvg:3, 5jvh:3, 1nkw:3, 1nwx:3, 1nwy:3, 3pio:3, 3pip:3, 4u67:3, 4v4g:B5, 4v4g:D5, 4v4g:F5, 4v4g:H5, 4v4g:J5, 4v4p:A8, 4v4r:B8, 4v4s:B8, 4v4t:B8, 4wfn:3, 2zjp:3, 2zjq:3, 2zjr:3
2 5a9z:Ae 64 62 0.6667 0.6562 0.6774 1.26e-22 5aa0:Ae, 7azo:L35A, 7azo:L35B, 7azs:L35A, 7azs:L35B, 9b00:18, 9b00:28, 6b4v:FA, 6b4v:JC, 6boh:FA, 6boh:KC, 6bok:FA, 6bok:IC, 6buw:R8, 6buw:Y8, 6bz6:R8, 6bz6:Y8, 6bz7:R8, 6bz7:Y8, 6bz8:R8, 6bz8:Y8, 6c5l:B8, 6c5l:D8, 6cae:18, 6cae:28, 6cfj:18, 6cfj:28, 6cfk:18, 6cfk:28, 6cfl:18, 6cfl:28, 8cvj:18, 8cvj:28, 8cvk:18, 8cvk:28, 8cvl:18, 8cvl:28, 5czp:Y8, 5czp:R8, 6czr:18, 6czr:28, 5d8b:BA, 5d8b:XB, 5dfe:Y8, 5dfe:R8, 5dox:18, 5dox:28, 5doy:18, 5doy:28, 5e7k:Q8, 5e7k:M5, 5e81:Q8, 5e81:M5, 8ekb:18, 8ekb:28, 5el4:Q8, 5el4:M5, 5el5:Q8, 5el5:M5, 5el6:Q8, 5el6:M5, 5el7:Q8, 5el7:M5, 8ev6:18, 8ev6:28, 8ev7:18, 8ev7:28, 5f8k:18, 5f8k:28, 8fc1:18, 8fc1:28, 8fc2:18, 8fc2:28, 8fc3:18, 8fc3:28, 8fc4:18, 8fc4:28, 8fc5:18, 8fc5:28, 8fc6:18, 8fc6:28, 5fdu:18, 5fdu:28, 5fdv:18, 5fdv:28, 6fkr:18, 6fkr:28, 8fom:R8, 8fom:Y8, 8fon:R8, 8fon:Y8, 8g29:18, 8g29:28, 8g2a:18, 8g2a:28, 8g2b:18, 8g2b:28, 8g2c:18, 8g2c:28, 8g2d:18, 8g2d:28, 6gsj:Q8, 6gsj:M5, 6gsk:Q8, 6gsk:M5, 6gsl:Q8, 6gsl:M5, 6gzq:d1, 6gzx:d1, 6gzx:d2, 6gzz:d1, 6gzz:d2, 5hau:16, 5hau:26, 5hcp:18, 5hcp:28, 5hcq:18, 5hcq:28, 5hcr:18, 5hcr:28, 5hd1:18, 5hd1:28, 5ib7:Q8, 5ib7:M5, 5ib8:Q8, 5ib8:M5, 5ibb:Q8, 5ibb:M5, 5imq:z, 5imr:z, 5j30:R8, 5j30:Y8, 5j3c:R8, 5j3c:Y8, 5j4b:18, 5j4b:28, 5j4c:18, 5j4c:28, 5j4d:FA, 5j4d:KC, 5j8b:8, 7jql:18, 7jql:28, 7jqm:18, 7jqm:28, 4l47:R8, 4l47:Y8, 4l71:R8, 4l71:Y8, 4lel:R8, 4lel:Y8, 4lfz:R8, 4lfz:Y8, 7lh5:B8, 7lh5:D8, 4lnt:R8, 4lnt:Y8, 4lsk:R8, 4lsk:Y8, 4lt8:R8, 4lt8:Y8, 7md7:18, 7md7:28, 6n1d:AL35, 6n1d:BL35, 6n9e:18, 6n9e:28, 6n9f:18, 6n9f:28, 5ndj:Q8, 5ndj:M5, 5ndk:Q8, 5ndk:M5, 6nd5:18, 6nd5:28, 6nd6:18, 6nd6:28, 6ndk:R8, 6ndk:Y8, 6nsh:R8, 6nsh:Y8, 6nta:R8, 6nta:Y8, 6nuo:R8, 6nuo:Y8, 6nwy:R8, 6nwy:Y8, 6o3m:R8, 6o3m:Y8, 6o97:18, 6o97:28, 6of1:18, 6of1:28, 6of6:R8, 6of6:Y8, 6oj2:R8, 6oj2:Y8, 6ope:R8, 6ope:Y8, 6ord:R8, 6ord:Y8, 6osi:R8, 6osi:Y8, 5ot7:d, 6otr:R8, 6otr:Y8, 6oxa:R8, 6oxa:Y8, 6oxi:R8, 6oxi:Y8, 4p6f:R8, 4p6f:Y8, 4p70:R8, 4p70:Y8, 6q95:e, 6qnq:Q8, 6qnq:M5, 6qnr:Q8, 6qnr:M5, 7rq8:18, 7rq8:28, 7rq9:18, 7rq9:28, 7rqa:18, 7rqa:28, 7rqb:18, 7rqb:28, 7rqc:18, 7rqc:28, 7rqd:18, 7rqd:28, 7rqe:18, 7rqe:28, 8t8b:18, 8t8b:28, 8t8c:18, 8t8c:28, 4tua:R8, 4tua:Y8, 4tub:R8, 4tub:Y8, 4tuc:R8, 4tuc:Y8, 4tud:R8, 4tud:Y8, 4tue:R8, 4tue:Y8, 7u2h:18, 7u2h:28, 7u2i:18, 7u2i:28, 7u2j:18, 7u2j:28, 6ucq:18, 6ucq:28, 8ud6:18, 8ud6:28, 8ud7:18, 8ud7:28, 8ud8:18, 8ud8:28, 6uo1:18, 6uo1:28, 5uq7:8, 5uq8:8, 8uvr:18, 8uvr:28, 8uvs:18, 8uvs:28, 4v4i:a, 4v4j:a, 4v4x:B7, 4v4y:B7, 4v4z:B7, 4v51:B8, 4v51:D8, 4v5a:B8, 4v5a:D8, 4v5c:B8, 4v5c:D8, 4v5d:B8, 4v5d:D8, 4v5e:B8, 4v5e:D8, 4v5f:B8, 4v5f:D8, 4v5g:B8, 4v5g:D8, 4v5j:B8, 4v5j:D8, 4v5k:B8, 4v5k:D8, 4v5l:B8, 4v5m:B8, 4v5n:B8, 4v5p:B8, 4v5p:D8, 4v5q:B8, 4v5q:D8, 4v5r:B8, 4v5r:D8, 4v5s:B8, 4v5s:D8, 4v63:B8, 4v63:D8, 4v67:B8, 4v67:D8, 4v68:B8, 4v6a:B8, 4v6a:D8, 4v6f:A8, 4v6f:D8, 4v6g:B8, 4v6g:D8, 4v7j:A8, 4v7j:B8, 4v7k:A8, 4v7k:B8, 4v7l:B8, 4v7l:D8, 4v7m:B8, 4v7m:D8, 4v7p:B5, 4v7p:C5, 4v7w:B8, 4v7w:D8, 4v7x:B8, 4v7x:D8, 4v7y:B8, 4v7y:D8, 4v7z:B8, 4v7z:D8, 4v83:B5, 4v83:D5, 4v84:B5, 4v84:D5, 4v87:A8, 4v87:D8, 4v8a:A8, 4v8a:B8, 4v8b:B8, 4v8b:D8, 4v8c:A8, 4v8c:B8, 4v8d:B8, 4v8d:D8, 4v8e:A8, 4v8e:C8, 4v8f:A8, 4v8f:D8, 4v8g:B8, 4v8g:D8, 4v8h:B8, 4v8h:D8, 4v8i:B8, 4v8i:D8, 4v8j:B8, 4v8j:D8, 4v8n:B8, 4v8n:D8, 4v8o:B8, 4v8q:A8, 4v8u:B8, 4v8u:D8, 4v8x:B8, 4v8x:D8, 5v8i:18, 5v8i:28, 4v90:B8, 4v95:B8, 4v95:D8, 4v97:B8, 4v97:D8, 4v9a:B8, 4v9a:D8, 4v9b:B8, 4v9b:D8, 4v9h:B8, 4v9i:B8, 4v9i:D8, 4v9j:B8, 4v9j:D8, 4v9k:B8, 4v9k:D8, 4v9l:B8, 4v9l:D8, 4v9m:B8, 4v9m:D8, 4v9n:B8, 4v9n:D8, 4v9q:A5, 4v9q:C5, 4v9r:B8, 4v9r:D8, 4v9s:B8, 4v9s:D8, 5vp2:18, 5vp2:28, 5vpo:R8, 5vpo:Y8, 5vpp:R8, 5vpp:Y8, 8vtu:18, 8vtu:28, 8vtv:18, 8vtv:28, 8vtw:18, 8vtw:28, 8vtx:18, 8vtx:28, 8vty:18, 8vty:28, 1vvj:R8, 1vvj:Y8, 1vy4:B8, 1vy4:D8, 1vy5:B8, 1vy5:D8, 1vy6:B8, 1vy6:D8, 1vy7:B8, 1vy7:D8, 4w29:B8, 4w29:D8, 4w2e:8, 4w2f:B8, 4w2f:D8, 4w2g:B8, 4w2g:D8, 4w2h:B8, 4w2h:D8, 4w2i:B8, 4w2i:D8, 4w4g:R8, 4w4g:Y8, 5w4k:18, 5w4k:28, 5wis:18, 5wis:28, 5wit:18, 5wit:28, 4wpo:A8, 4wpo:C8, 4wq1:Q8, 4wq1:M5, 4wqf:A8, 4wqf:C8, 4wqr:Q8, 4wqr:M5, 4wqu:A8, 4wqu:C8, 4wqy:A8, 4wqy:C8, 4wr6:Q8, 4wr6:M5, 4wra:Q8, 4wra:M5, 4wro:Q8, 4wsd:Q8, 4wsd:M5, 4wsm:Q8, 4wsm:M5, 4wt1:Q8, 4wt1:M5, 4wt8:C9, 4wt8:D9, 4wu1:Q8, 4wu1:M5, 4wzd:Q8, 4wzd:M5, 4wzo:Q8, 4wzo:M5, 4xej:AL35, 4xej:BL35, 6xhv:18, 6xhv:28, 6xhw:18, 6xhw:28, 6xhx:18, 6xhx:28, 6xhy:18, 6xhy:28, 6xqd:18, 6xqd:28, 6xqe:18, 6xqe:28, 4y4o:18, 4y4o:28, 4y4p:18, 4y4p:28, 4ypb:R8, 4ypb:Y8, 4yzv:R8, 4yzv:Y8, 4z3s:18, 4z3s:28, 4z8c:18, 4z8c:28, 4zer:18, 4zer:28, 5zlu:AA, 4zsn:R8, 4zsn:Y8
3 9c4g:2 67 61 0.4762 0.4478 0.4918 1.19e-10 8crx:2, 8cvm:2
4 5myj:B7 64 61 0.3175 0.3125 0.3279 1.35e-04
5 8fmw:Ag 66 61 0.4127 0.3939 0.4262 2.42e-04 8fn2:g
6 8buu:3 65 61 0.3492 0.3385 0.3607 3.25e-04 7aqc:e, 7aqd:e, 7as8:i, 7as9:i, 6ha1:3, 6ha8:3, 6htq:4, 3j9w:B7, 5njt:s, 7o5b:3, 7ope:i, 8qcq:3, 7qgu:e, 7qh4:e, 8qpp:3, 7qv1:3, 7qv2:3, 7qv3:3, 8r55:3, 8s1p:3, 8s1u:3, 6tnn:s, 6tpq:s
7 5nrg:3 65 61 0.3175 0.3077 0.3279 5.23e-04 7asm:3, 7asn:3, 7aso:j, 7asp:2, 6ddd:Q, 6ddg:Q, 6fxc:A3, 6fxc:B3, 5hkv:3, 5hl7:3, 6hma:3, 5li0:7, 5nd8:7, 5nd9:7, 5ngm:A3, 7nhl:8, 7nhm:8, 8p2f:8, 8p2g:8, 8p2h:8, 7p48:3, 6s0x:3, 6s0z:3, 6s12:3, 6s13:3, 6sj6:7, 5t7v:LH, 5tcu:LH, 7ttu:Q, 7ttw:Q, 4wce:3, 4wf9:3, 4wfa:3, 4wfb:3, 6wqn:Q, 6wqq:Q, 6wrs:Q, 6wru:Q, 8y36:3, 8y37:3, 8y38:3, 8y39:3, 6yef:7
8 7f0d:3 62 61 0.3333 0.3387 0.3443 0.001 7kgb:3, 7msc:3, 7msh:3, 7msm:3, 7msz:3, 7mt2:3, 7mt3:3, 7mt7:3, 7sfr:3, 5v7q:3, 5v93:3
9 6eri:Ad 72 29 0.2222 0.1944 0.4828 0.001 5h1s:e, 5mlc:5, 5mmi:4, 5mmm:4, 4v61:B5, 5x8p:4, 5x8t:4
10 6dzi:e 63 30 0.2381 0.2381 0.5000 0.002 6dzp:e, 8fr8:x, 8kab:e, 5o60:e, 5o61:e, 7s0s:f, 8v9j:7, 8v9k:7, 8v9l:7, 8whx:8, 8why:8, 8wi7:8, 8wi8:8, 8wib:8, 8wic:8, 7xam:e, 5xym:3, 8xz3:e, 7y41:e, 5zeb:6, 5zep:3, 5zet:6
11 7jil:e 64 29 0.2698 0.2656 0.5862 0.008
12 7nhk:7 64 66 0.3651 0.3594 0.3485 0.009 6o8w:5, 6o8x:5, 6o8y:5, 6o8z:5, 6o90:5, 7p7q:7, 7p7r:7, 7p7s:7, 7p7t:7, 7p7u:7, 6w6p:5, 6wu9:5
13 8uu9:7 65 63 0.3016 0.2923 0.3016 0.035 8a57:8, 8a5i:8, 8a63:8, 7nhn:8, 8uu4:7, 8uu5:7, 8uu6:7, 8uu7:7, 8uu8:7, 8uua:7
14 6n10:A 403 38 0.2063 0.0323 0.3421 0.28
15 7p1o:X 386 17 0.1429 0.0233 0.5294 1.1 7p1d:A, 7p1e:A, 7p1f:B, 7p1f:A, 7p1o:A
16 7p1v:A 384 17 0.1429 0.0234 0.5294 1.2 7p1q:A, 7p1r:A, 7p1r:B, 7p1r:C, 7p1r:D, 7p1s:A, 7p1s:B, 7p1s:C, 7p1s:D, 7p1u:A, 7p1u:B, 7p1v:B, 7p1v:C, 7p1v:D
17 2xzj:A 386 17 0.1429 0.0233 0.5294 1.9 4m4v:A, 2xzi:A, 2xzi:B, 2xzj:B, 2xzk:A, 2xzk:B
18 8d2s:A 475 29 0.1270 0.0168 0.2759 3.3 8d2u:A, 8d2v:A, 8d2w:A, 8d2x:A
19 2xpo:A 139 46 0.2222 0.1007 0.3043 4.0 2xpn:A, 2xpo:C, 2xpp:A
20 7mjs:X 458 29 0.1429 0.0197 0.3103 5.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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