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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTEKGHTFAEELQKIQCTLQDVGSALATPCSSA
TTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCRAVCCRAERRVVPLVQMGETDANVAKFLNRLSDYLFT
LARYAAMKEGNQEKIYMKNDPSAESEG

The query sequence (length=187) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rut:E 187 187 1.0000 1.0000 1.0000 1.46e-140 6d5k:A, 6d5k:C, 6d5k:B, 6d5x:A, 6d5x:C, 6d5x:B, 2idx:A, 2idx:C, 2idx:B, 7rut:D, 7rut:C, 7rut:F, 7rut:B, 7rut:A, 7ruu:A, 7ruu:C, 7ruu:B, 7ruu:D, 7ruv:A, 7ruv:D, 7ruv:B, 7ruv:C
2 3ci1:A 188 179 0.3797 0.3777 0.3966 7.34e-38 3ci3:A, 3ci4:A, 3gah:A, 3gai:A, 3gaj:A, 2nt8:A, 2r6t:A, 2r6t:B, 2r6x:A, 2r6x:B
3 3ke5:A 182 167 0.3797 0.3901 0.4251 2.59e-33 3ke5:C, 3ke5:B
4 2zhz:B 174 176 0.3636 0.3908 0.3864 5.03e-32 2zhz:A, 2zhz:C
5 8d32:A 186 171 0.3316 0.3333 0.3626 2.15e-20 6wgs:A, 6wgv:A, 6wh5:A, 6wh5:B, 6wh5:C
6 7rka:A 211 46 0.0749 0.0664 0.3043 2.2
7 8joz:A 257 58 0.1070 0.0778 0.3448 2.4 4htf:A, 4htf:B
8 4p0q:B 284 53 0.0963 0.0634 0.3396 2.7 4p0r:B, 4p0r:D, 4p0s:B, 4p0s:H, 4p0s:F, 4p0s:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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