Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSAQG

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2li8:A 63 63 1.0000 1.0000 1.0000 1.96e-41
2 2cqf:A 63 53 0.8254 0.8254 0.9811 7.06e-34
3 5udz:A 139 51 0.7302 0.3309 0.9020 1.82e-29 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
4 2ec7:A 49 38 0.2381 0.3061 0.3947 4.45e-04
5 2a51:A 39 37 0.2540 0.4103 0.4324 0.030
6 7s7b:F 352 26 0.1429 0.0256 0.3462 0.093 7s7b:B, 7s7c:B
7 5w0n:A 379 27 0.1429 0.0237 0.3333 0.28 5w0m:A, 5w0m:C, 5w0n:B
8 6rwg:A 157 44 0.2381 0.0955 0.3409 0.38 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
9 4v6w:CT 158 22 0.1429 0.0570 0.4091 1.1 6xu6:CT, 6xu7:CT, 6xu8:CT
10 5w0b:A 334 25 0.1429 0.0269 0.3600 1.4
11 3i01:A 673 36 0.1905 0.0178 0.3333 1.5 3i01:B, 3i01:C, 3i01:D, 3i04:A, 3i04:B, 3i04:C, 3i04:D, 1mjg:A, 1mjg:B, 1mjg:C, 1mjg:D, 1oao:A, 1oao:B, 6x5k:A, 6x5k:B, 6x5k:C, 6x5k:D, 2z8y:A, 2z8y:B, 2z8y:C, 2z8y:D
12 3nyb:B 64 15 0.1429 0.1406 0.6000 3.3
13 5jox:A 502 25 0.1905 0.0239 0.4800 3.7 5jox:B, 5joy:A, 5joy:B
14 2bl6:A 37 36 0.2063 0.3514 0.3611 6.7
15 7c4c:A 332 45 0.2381 0.0452 0.3333 8.0 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
16 7c4c:A 332 47 0.2222 0.0422 0.2979 8.4 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
17 2o4u:X 331 14 0.1429 0.0272 0.6429 9.9 2poq:X

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417