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BioLiP
>protein
PKCRCGITTCRNSRCPCYKSYNSCAGCHCVGCKNPHK

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rkg:A 37 37 1.0000 1.0000 1.0000 1.29e-20
2 2lua:A 52 44 1.0000 0.7115 0.8409 2.85e-18 4rkg:B, 4rkh:D, 4rkh:E, 4rkh:C, 4rkh:F
3 7pfo:5 605 23 0.2973 0.0182 0.4783 0.99 8b9d:5
4 7w1y:5 710 23 0.2973 0.0155 0.4783 0.99 7plo:5, 7w1y:D
5 6raw:5 576 23 0.2973 0.0191 0.4783 1.1
6 6rax:5 620 23 0.2973 0.0177 0.4783 1.6 6ray:5, 6raz:5
7 1q17:C 295 14 0.1892 0.0237 0.5000 1.7 7f4e:A, 7f51:A, 2od2:A, 2od7:A, 2od9:A, 1q14:A, 1q17:A, 1q17:B, 1q1a:A, 2qqf:A, 2qqg:A, 1szc:A, 1szd:A
8 6m4k:A 496 20 0.2162 0.0161 0.4000 2.0 6m4l:A, 6m4m:A
9 8q6p:5 321 20 0.2703 0.0312 0.5000 2.4
10 8ouw:5 541 20 0.2703 0.0185 0.5000 2.4
11 5fd3:B 108 33 0.3514 0.1204 0.3939 3.6 5fd3:A
12 7kso:A 395 32 0.3514 0.0329 0.4062 4.2 7ksr:A, 7ktp:A
13 7td5:A 497 32 0.3514 0.0262 0.4062 4.2
14 7td5:F 447 32 0.3514 0.0291 0.4062 4.4
15 7bkb:E 411 32 0.2703 0.0243 0.3125 8.1 7bkb:e, 7bkc:E, 7bkc:e, 7bkd:E, 7bke:E
16 6znp:A 748 21 0.2162 0.0107 0.3810 8.5 6znq:A
17 6xtx:5 577 19 0.2432 0.0156 0.4737 9.7 6xty:5
18 8s91:D 621 20 0.2432 0.0145 0.4500 9.7 7dpd:A, 7dpd:B, 8s91:E, 8s91:F, 8s94:D, 8s94:F, 8s94:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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