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BioLiP
>protein
PISEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHPVWYLP

The query sequence (length=61) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4wcg:B 61 61 1.0000 1.0000 1.0000 2.35e-41 4wcg:A
2 4kmf:A 62 57 0.3279 0.3226 0.3509 7.32e-06
3 4lb5:B 63 59 0.3115 0.3016 0.3220 0.002 4lb5:A, 4lb6:B
4 7c0i:B 67 44 0.2131 0.1940 0.2955 0.003 7c0i:A, 7c0i:C
5 3eyi:B 67 60 0.2951 0.2687 0.3000 0.073 3eyi:A, 4ka4:A, 4ka4:E, 4ka4:B, 4ka4:D
6 7pzb:A 227 27 0.1803 0.0485 0.4074 0.42 7pza:A, 7pza:B, 7pzb:B
7 4v6w:AG 231 53 0.2623 0.0693 0.3019 0.56 6xu6:AG, 6xu7:AG, 6xu8:AG
8 7xql:A 444 52 0.2295 0.0315 0.2692 1.9
9 2ewn:A 318 40 0.1639 0.0314 0.2500 3.3 2ewn:B, 1hxd:A, 1hxd:B, 4wf2:A
10 1bib:A 294 40 0.1639 0.0340 0.2500 3.3
11 4ald:A 363 26 0.1803 0.0303 0.4231 3.5 6ald:A, 6ald:B, 3dft:A, 3dft:B, 3dft:C, 3dft:D, 3lge:A, 3lge:B, 3lge:C, 3lge:D, 2ot0:A, 2ot0:B, 2ot0:C, 2ot0:D, 2ot1:A, 2ot1:B, 2ot1:C, 2ot1:D, 2quv:A, 2quv:B, 2quv:D, 5tle:A, 5tle:B, 5tle:C, 5tle:D, 5tlh:A, 5tlh:B, 5tlh:C, 5tlh:D, 5tlw:A, 5tlw:B, 5tlw:C, 5tlw:D, 5tlz:A, 5tlz:B, 5tlz:C, 5tlz:D, 3tu9:A, 3tu9:B, 3tu9:C, 3tu9:D, 6xmh:A, 6xmh:B, 6xml:A, 6xml:B, 6xmm:A, 6xmm:B, 6xmo:A, 6xmo:B, 1zai:A, 1zai:B, 1zai:C, 1zai:D, 1zaj:A, 1zaj:B, 1zaj:C, 1zaj:D, 1zal:A, 1zal:B, 1zal:C, 1zal:D
12 2x4h:C 131 51 0.2787 0.1298 0.3333 3.7 2x4h:A, 2x4h:B, 2x4h:D
13 7kua:A 149 45 0.2131 0.0872 0.2889 5.6
14 3kv6:D 448 31 0.1639 0.0223 0.3226 6.0 3kv5:D, 3kv5:A, 3kv6:A, 3kv9:A, 3kva:A, 3u78:A
15 3i54:D 228 51 0.2623 0.0702 0.3137 6.1 4a2u:A, 4a2u:B, 4a2u:C, 4a2u:D, 4a2u:E, 4a2u:F, 4a2u:G, 4a2u:H, 3h3u:B, 3i54:A, 3i54:B, 3i54:C, 3i59:A, 3i59:B, 3mzh:A, 3mzh:B
16 5db4:B 175 17 0.1311 0.0457 0.4706 8.4
17 8z98:B 647 45 0.2459 0.0232 0.3333 9.4 8z9q:B
18 5oql:o 237 53 0.2787 0.0717 0.3208 9.4 7olc:SG, 7old:SG, 8oo0:SG, 7r81:H2, 6rxu:Cd, 6rxv:Cd, 6rxx:Cd, 6rxz:Cd, 7z3n:SG, 7z3o:SG
19 4cyd:B 225 26 0.1803 0.0489 0.4231 9.9 4cyd:A, 4cyd:C, 4cyd:D, 3r6s:A, 3r6s:B, 3r6s:C, 3r6s:D, 3r6s:E, 3r6s:F
20 8z9h:B 676 45 0.2459 0.0222 0.3333 9.9 8p0b:B, 8p0g:B, 8p0u:B, 8z85:B, 8z8j:B, 8z8n:B, 8z97:B, 8z9h:I, 8z9r:B, 8z9r:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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