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BioLiP
>protein
PIAQIHILEGRSDEQKETLIREVSEAISRSLDAPLTSVRVIITEMAKGHFGIGGELASKV

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bjp:A 62 60 1.0000 0.9677 1.0000 1.24e-37 6bgn:A, 6bgn:B, 6bgn:C, 6bgn:D, 6bgn:E, 6bgn:F, 6bgn:I, 6bgn:G, 6bgn:H, 6bgn:J, 6bgn:K, 6bgn:L, 6bgn:O, 6bgn:M, 6bgn:N, 1bjp:B, 1bjp:C, 1bjp:D, 1bjp:E, 5clo:M, 5clo:N, 5clo:O, 6ghw:C, 5tig:A, 5tig:B, 5tig:C, 5tig:F, 5tig:O, 5tig:P, 5tig:Q
2 2opa:A 61 58 0.3667 0.3607 0.3793 3.71e-10
3 7ms8:A 146 53 0.3000 0.1233 0.3396 0.16 7ms1:A, 7ms3:A, 7ms9:A, 7ms9:B, 7ms9:H, 7ms9:I, 7ms9:K
4 3ej3:C 64 50 0.2333 0.2188 0.2800 2.0 3ej3:A, 3ej3:E, 3ej3:G, 3ej3:I, 3ej3:K
5 2qb5:A 338 48 0.2000 0.0355 0.2500 5.4 2q7d:A, 2q7d:B, 2qb5:B
6 3hyv:A 429 26 0.2167 0.0303 0.5000 5.7 3hyv:B, 3hyv:C, 3hyv:D, 3hyv:E, 3hyv:F, 3hyw:A, 3hyw:B, 3hyw:C, 3hyw:D, 3hyw:E, 3hyw:F, 3hyx:A, 3hyx:B, 3hyx:C, 3hyx:D, 3hyx:E, 3hyx:F
7 6bh8:A 371 25 0.1667 0.0270 0.4000 6.2
8 2ypt:A 424 25 0.1667 0.0236 0.4000 6.2 2ypt:B, 2ypt:D, 2ypt:E
9 5syt:A 444 25 0.1667 0.0225 0.4000 6.2 4aw6:A, 4aw6:B, 4aw6:D, 4aw6:E, 6bh8:B
10 4j34:B 390 47 0.2667 0.0410 0.3404 6.6 4j2w:A, 4j2w:B, 4j31:A, 4j31:B, 4j33:A, 4j33:B, 4j34:A, 4j36:A, 4j36:B, 5x6r:A, 5x6r:B
11 7fj8:A 395 26 0.1500 0.0228 0.3462 8.3 7fj9:A, 7fj9:B, 7fja:A, 7fja:B, 7fjb:A, 7fjb:B
12 7vg5:A 204 33 0.1833 0.0539 0.3333 9.0 7vg5:B
13 6dam:A 563 26 0.1833 0.0195 0.4231 9.2
14 8w0b:A 667 43 0.2167 0.0195 0.3023 9.2 7kds:A, 8v4o:A, 8v4o:B, 8v4o:C, 8v4p:A, 8v4p:B, 8v4p:C, 8v4r:A, 8v4r:B, 8v4r:C, 8w0b:B, 8w0b:C, 8w0c:A, 8w0c:B, 8w0c:C, 8w0d:A, 8w0d:B, 8w0d:C, 8w0h:A, 8w0h:B, 8w0h:C, 8w0j:A, 8w0j:B, 8w0j:C, 8w0l:A, 8w0l:B, 8w0l:C, 8w0m:A, 8w0m:B, 8w0m:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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