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BioLiP
>protein
PHIRYAFQNDKLLLQQASVGRLTLVNKTTILLRPMKTTTVDLGLYARPPEGHGLMLWGSTSRPVTSHVGIIDPGYTGELR
LILQNQRRYNSTLRPSELKIHLAAFRYATPQGPINHPQYPGDVGLDVSLPKDLALFPHQTVSVTLTVPPPSIPHHRPTIF
GRSGLAMQGILVKPCRWRRGGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLTSFYSPHSDAGVLGPRSLFRWASCTFE
EVPSLAM

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bt1:A 254 252 1.0000 0.9724 0.9802 0.0 2bsy:A, 2we0:A, 2we1:A, 2we2:A, 2we3:A
2 2ol1:C 125 100 0.1134 0.2240 0.2800 0.032 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
3 1f7r:A 133 90 0.1012 0.1880 0.2778 0.043 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
4 3t64:A 153 109 0.1255 0.2026 0.2844 0.13 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
5 3t64:A 153 91 0.0891 0.1438 0.2418 2.5 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
6 2y8c:C 136 81 0.0891 0.1618 0.2716 0.16 2y8c:B
7 2y8c:C 136 99 0.1093 0.1985 0.2727 1.3 2y8c:B
8 5ixm:A 543 102 0.1215 0.0552 0.2941 0.47 5ixm:C, 5ixm:E, 5ixm:G
9 3f4f:A 138 59 0.0607 0.1087 0.2542 1.0 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
10 3tp1:A 114 57 0.0769 0.1667 0.3333 1.1 2d4n:A, 3tpn:A, 3tps:A, 3tpw:A, 3tpy:A, 3tq3:A, 3tq4:A, 3tq5:A, 3trl:A, 3trn:A, 3ts6:A, 3tsl:A, 3tta:A
11 3tp1:A 114 95 0.1053 0.2281 0.2737 1.7 2d4n:A, 3tpn:A, 3tps:A, 3tpw:A, 3tpy:A, 3tq3:A, 3tq4:A, 3tq5:A, 3trl:A, 3trn:A, 3ts6:A, 3tsl:A, 3tta:A
12 6i21:A 135 93 0.1053 0.1926 0.2796 1.1 6i20:A, 6i20:B, 6i20:C, 6i20:D, 6i22:A, 6i22:B, 6i22:C, 6i22:D, 6i23:A, 6i23:B, 6i24:A, 6i25:A
13 2wop:A 554 54 0.0850 0.0379 0.3889 1.8 2wok:A
14 4dp0:X 99 47 0.0648 0.1616 0.3404 2.4 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
15 6lj3:A 164 41 0.0567 0.0854 0.3415 2.8 6ky9:A, 6ky9:B, 6ky9:C, 6kz6:C, 6kz6:B, 6kz6:A, 6lis:A, 6lis:B, 6lis:C, 6lis:D, 6lis:F, 6lis:E, 6lj3:C, 6lj3:B
16 5y5p:D 171 67 0.0850 0.1228 0.3134 7.4 5y5p:A, 5y5p:B, 5y5p:C, 5y5p:E, 5y5p:F, 5y5q:A, 5y5q:B, 5y5q:C
17 6mao:A 137 30 0.0445 0.0803 0.3667 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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