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BioLiP
>protein
PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQAIWDAEIAPQMEALIKKPGYSMNA

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gyx:B 76 76 1.0000 1.0000 1.0000 3.12e-51 1gyy:A, 1gyy:B
2 6k3c:B 351 26 0.1447 0.0313 0.4231 1.6
3 3ip5:A 348 35 0.1579 0.0345 0.3429 3.5 3ip6:A, 3ip7:A, 3ip9:A, 3ipa:A, 3ipc:A
4 8oku:A 338 48 0.1711 0.0385 0.2708 4.1 8oku:B, 8r4o:A, 8r4o:C, 8r4o:E, 8r4o:G, 8r4o:I, 8r4o:K, 8r4q:A, 8r4q:C, 8r4q:E, 8r4q:G, 8r4q:I, 8r4q:K, 8r4u:A, 8r4u:C, 8r4u:E, 8r4u:G, 8r4v:A, 8r4v:B, 8r4v:C
5 8r8r:A 1188 33 0.1711 0.0109 0.3939 4.4
6 4p7m:A 104 38 0.1579 0.1154 0.3158 5.2 4p7s:A, 4p7s:B, 4p7s:C
7 4pso:I 221 47 0.1974 0.0679 0.3191 6.6 4pso:A, 4pso:B, 4pso:C, 4pso:D, 4pso:F, 4pso:G, 4pso:H
8 1pz1:A 333 42 0.1974 0.0450 0.3571 6.8 1pz1:B
9 4am8:D 349 65 0.1842 0.0401 0.2154 8.2 4a8h:A, 4a8h:B, 4a8p:A, 4a8p:B, 4a8p:C, 4a8p:D, 4a8p:E, 4a8p:F, 4a8t:A, 4am8:A, 4am8:B, 4am8:C, 4am8:E, 4am8:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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