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BioLiP
>protein
PHAFKPGDLVFAKMKGYPHWPARIDDIAAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWE
IQNNPHASYS

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3qj6:A 90 90 1.0000 1.0000 1.0000 3.24e-63 3qby:B
2 6iit:B 100 92 0.7889 0.7100 0.7717 7.60e-48 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
3 5xsk:A 90 84 0.7333 0.7333 0.7857 2.54e-45
4 8cbn:L 86 84 0.7444 0.7791 0.7976 1.81e-44 8cbn:K, 8cbq:K, 8pc5:K, 8pc6:L, 8pc6:K, 8peo:K, 8pep:L, 8pep:K, 6s01:K
5 6kcp:B 84 84 0.4111 0.4405 0.4405 4.44e-15 6kco:O, 6kco:F, 6kco:M, 6kco:E, 6kco:P, 6kco:B, 6kco:H, 6kco:D, 6kco:I, 6kco:N, 6kco:G, 6kco:J, 6kco:L, 6kco:A, 6kco:C, 6kco:K
6 9exy:B 135 104 0.3000 0.2000 0.2596 0.002 6ue6:C, 6ue6:F
7 5b73:A 313 77 0.2333 0.0671 0.2727 0.004 4cos:A, 7cwh:B, 5y1z:C, 5y1z:D
8 9exw:A 148 66 0.2111 0.1284 0.2879 0.004 9exw:B, 9exx:A, 9exx:B, 9exy:A, 7lmt:A, 7lmt:H, 7lmt:B, 7lmt:C, 7lmt:D, 7lmt:E, 7lmt:F, 7lmt:G, 7mdn:A, 7mdn:H, 7mdn:B, 7mdn:C, 7mdn:D, 7mdn:E, 7mdn:F, 7mdn:G, 6ue6:A, 6ue6:B, 6ue6:D, 6ue6:E, 6ue6:G, 6ue6:H, 5vc8:A, 7vln:B, 6xcg:A, 6xcg:B, 6xcg:C
9 4n4g:A 209 38 0.1667 0.0718 0.3947 0.007 4n4h:A, 4n4i:A, 4ns5:A
10 5ciu:B 121 21 0.1222 0.0909 0.5238 0.22
11 5nrr:B 137 21 0.1222 0.0803 0.5238 0.23 5ciu:A, 5nr3:A, 5nr3:B, 5nrr:A, 5nrs:A, 5nrs:B, 5nrv:D, 5nrv:A, 5nv0:A, 5nv0:B, 5nv2:A, 5nv2:B, 5nv7:A, 5nv7:B, 6r3e:A
12 6g2b:A 123 63 0.2222 0.1626 0.3175 0.36 6g24:A, 6g25:A, 6g27:A, 6g29:A, 6g2c:A, 6g2e:A, 6g2f:A, 6g2o:A
13 3mo8:A 127 19 0.1333 0.0945 0.6316 0.68 5c6s:A, 2x4w:A, 2x4x:A, 2x4x:C, 2x4x:E, 2x4x:G, 2x4y:A, 2x4y:C, 2x4y:E, 2x4y:G, 2x4y:I, 2x4y:K, 2x4y:M, 2x4y:O
14 7e29:A 496 52 0.2222 0.0403 0.3846 1.0
15 2e74:B 160 28 0.1444 0.0813 0.4643 2.2 2d2c:B, 2d2c:O, 2e75:B, 2e76:B, 4h0l:B, 4h13:B, 4h44:B, 4i7z:B, 4ogq:B, 4pv1:B, 1vf5:B, 1vf5:O, 2zt9:B
16 6aay:A 1199 30 0.1444 0.0108 0.4333 3.8
17 2q3h:A 171 29 0.1333 0.0702 0.4138 4.2
18 6cpu:A 526 51 0.1889 0.0323 0.3333 5.1 6cpt:A
19 8wg4:A 688 50 0.1444 0.0189 0.2600 6.9
20 8wg3:A 548 50 0.1444 0.0237 0.2600 7.8
21 8agc:A 697 23 0.1111 0.0143 0.4348 8.0
22 6ezn:F 650 23 0.1111 0.0154 0.4348 8.3 8agb:A, 8age:A, 6c26:A, 7oci:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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