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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGSFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLV
NERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5e6o:A 117 117 1.0000 1.0000 1.0000 3.81e-84 5e6o:B, 5e6o:C, 5e6o:D
2 5cx3:A 119 114 0.5812 0.5714 0.5965 1.06e-49 5cx3:B, 5cx3:C, 5cx3:D, 7r9w:A, 7r9z:A, 7ra0:A, 6tbe:A
3 7elg:A 122 114 0.5641 0.5410 0.5789 7.31e-46 5d94:A, 7ga8:A, 7ga9:A, 7gaa:A, 7gab:A, 7gac:A, 7gad:A, 7gae:A, 7gaf:A, 7gag:A, 7gah:A, 7gai:A, 7gaj:A, 7gak:A, 7gal:A, 7gam:A, 7gan:A, 7gao:A, 7gaq:A, 7gar:A, 7gas:A, 5gmv:B, 5gmv:A, 2k6q:A, 2lue:A, 2n9x:A, 8q7k:A, 8q7k:B, 5wrd:A, 5wrd:B, 5xad:A, 5xad:B, 5yiq:A, 5yis:B, 5yis:A, 2zjd:A, 2zjd:C
4 5dpw:A 115 113 0.4530 0.4609 0.4690 1.07e-35 5dpw:C, 5dpw:E, 5dpw:G, 5dpw:I, 5dpw:K, 5dpw:M, 5dpw:O
5 3h9d:B 116 114 0.3504 0.3534 0.3596 4.08e-27
6 6h8c:A 116 114 0.3846 0.3879 0.3947 6.82e-27
7 7brn:A 133 116 0.3504 0.3083 0.3534 1.57e-23 3vxw:A, 6wy6:A, 6wy6:B, 2zpn:A, 2zpn:D, 2zpn:B, 2zpn:C
8 5yip:A 123 123 0.3761 0.3577 0.3577 2.05e-23 7aa7:A, 7aa7:B, 7aa9:A, 7aa9:E, 7aa9:C, 7aa9:I, 7aa9:G, 7aa9:K, 7cdb:A, 7cdb:B, 6hoi:B, 6hoi:A, 6hol:A, 6hol:B, 7jhx:A, 7jhx:B, 2l8j:A, 5lxh:A, 5lxh:B, 5lxh:C, 5lxi:D, 5lxi:B, 8x8a:A, 6yoo:A
9 5l83:B 112 112 0.3590 0.3750 0.3750 1.19e-22 5l83:A
10 6aaf:A 112 110 0.2906 0.3036 0.3091 9.32e-21
11 3dow:A 119 114 0.3248 0.3193 0.3333 1.69e-20 6a9x:D, 8afi:E, 8afi:G, 8afi:A, 8afi:I, 8afi:M, 8afi:O, 8afi:C, 8afi:K, 7bv4:A, 7bv4:E, 7bv4:B, 7bv4:G, 3d32:A, 3d32:B, 7ea7:B, 7fb5:A, 8t2n:A, 8t2n:C, 8t31:A, 8t31:C, 8t31:E, 8t31:G, 8t31:I, 8t32:A, 8t33:A, 7vec:A, 7vec:B, 7vec:C, 7vec:D, 7vec:E, 7vec:F, 7vec:G, 7vec:H, 7vec:I, 7vec:J, 7vec:L, 8w6a:A, 8w6a:G, 8w6a:B, 8w6a:D, 3wim:A, 4xc2:A, 4xc2:B, 4xc2:C, 4xc2:D, 5yir:D, 5yir:A, 5yir:B, 7zkr:A, 7zl7:C, 7zl7:A
12 5azf:A 119 116 0.3162 0.3109 0.3190 1.10e-19 5azf:B, 5azg:A, 5azg:B, 8tgf:A
13 4eoy:A 124 122 0.3333 0.3145 0.3197 1.20e-15 4eoy:B, 4eoy:C
14 4naw:A 88 76 0.1624 0.2159 0.2500 0.13 4naw:E, 4naw:I, 4naw:M
15 7eu4:C 94 98 0.2137 0.2660 0.2551 0.25 7eu4:A, 7eu4:E, 7eu4:G
16 7ucl:A 616 43 0.1111 0.0211 0.3023 5.9 7ucl:B
17 4eu2:Y 196 38 0.1026 0.0612 0.3158 8.2 5fg9:J, 5l5f:J, 5l5o:J, 5l5w:J, 5l60:J, 5l63:J, 5l66:J, 5l6c:J, 5ltt:J, 5m2b:J, 4qux:J, 4qv3:J, 4qv4:J, 4qv7:J, 4qv9:J, 4r02:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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