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BioLiP
>protein
PGSATVLTLGAHMCKWPIGDPSSEGFTFCGRRSSEGPYCVEHARVAYQ

The query sequence (length=48) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ye1:G 103 48 1.0000 0.4660 1.0000 2.41e-32 7ye2:G, 5yiv:A, 5yiv:B, 5yiv:C, 5yiv:D, 5yiw:A, 5yiw:C, 5yix:B, 5z7i:A, 5z7i:C
2 6nor:A 349 36 0.2500 0.0344 0.3333 0.87 6nor:B, 6nor:C, 6nor:D, 6nor:E, 6nor:F
3 3b2d:C 139 23 0.2083 0.0719 0.4348 1.1 3b2d:D
4 6bjq:A 598 29 0.1875 0.0151 0.3103 1.3 6d4o:A, 8gen:A, 8geo:A, 8geq:A, 8ger:A, 8ugt:A
5 3t6q:C 139 36 0.2292 0.0791 0.3056 1.9 3m7o:A, 3m7o:D, 3t6q:D
6 3rg1:C 138 23 0.1875 0.0652 0.3913 3.7 3rg1:O, 3rg1:D, 3rg1:H, 3rg1:L, 3rg1:P
7 3l4u:A 864 47 0.2500 0.0139 0.2553 4.8 3ctt:A, 3l4t:A, 3l4v:A, 3l4w:A, 3l4x:A, 3l4y:A, 3l4z:A, 2qmj:A
8 3wqy:A 905 29 0.1875 0.0099 0.3103 7.3 3wqy:B, 3wqz:A, 3wqz:B, 2ztg:A
9 5idj:A 242 24 0.2083 0.0413 0.4167 8.0 5idm:A, 5idm:B
10 7dmk:A 732 26 0.2083 0.0137 0.3846 8.6 7dmk:B, 7dmk:C, 7dmk:D
11 5dp2:A 335 19 0.1458 0.0209 0.3684 9.5
12 4zxa:W 324 30 0.2292 0.0340 0.3667 9.6 4zxa:X, 4zxa:Y, 4zxa:Z, 4zxc:W, 4zxc:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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