Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGPVLPKNALMQLNEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPN

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2l3j:A 236 74 1.0000 0.3136 1.0000 1.10e-47 2l3c:A
2 2l3j:A 236 60 0.4865 0.1525 0.6000 4.98e-17 2l3c:A
3 5dv7:C 137 62 0.5811 0.3139 0.6935 5.84e-26
4 5dv7:C 137 45 0.3378 0.1825 0.5556 2.40e-11
5 8e0f:B 454 51 0.4189 0.0683 0.6078 1.61e-13 6d06:A, 6d06:D, 8e0f:A, 8e4x:A, 8e4x:B, 5ed1:A, 5ed1:D, 5ed2:A, 5ed2:D, 5hp2:A, 5hp2:D, 5hp3:A, 5hp3:D, 7kfn:A, 7kfn:D, 2l2k:B, 6vff:A, 6vff:B, 1zy7:A, 1zy7:B
6 7zpk:C 233 46 0.2568 0.0815 0.4130 1.19e-04 3adl:A, 5n8l:A, 5n8m:A
7 7zpk:C 233 46 0.2838 0.0901 0.4565 1.6 3adl:A, 5n8l:A, 5n8m:A
8 7zlq:B 82 51 0.2568 0.2317 0.3725 1.21e-04 7zlq:A
9 1di2:A 69 49 0.2568 0.2754 0.3878 3.34e-04
10 6sdw:A 177 46 0.2703 0.1130 0.4348 3.82e-04 6htu:A, 6htu:B, 6htu:C, 6sdy:A
11 6sdw:A 177 54 0.2432 0.1017 0.3333 0.042 6htu:A, 6htu:B, 6htu:C, 6sdy:A
12 1ekz:A 76 47 0.2432 0.2368 0.3830 0.001
13 1yyk:A 221 47 0.2027 0.0679 0.3191 0.015 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
14 1di2:B 60 34 0.2027 0.2500 0.4412 0.51
15 8i2g:R 595 17 0.1351 0.0168 0.5882 1.4
16 8dfv:K 253 21 0.1622 0.0474 0.5714 2.0 8dg5:K
17 8dga:K 182 21 0.1622 0.0659 0.5714 2.1 8dg7:K
18 8eyk:E 966 53 0.1892 0.0145 0.2642 2.4 8eyi:E, 8gkc:A, 8gkc:D
19 4z3w:C 653 62 0.2297 0.0260 0.2742 2.6 4z3w:A, 4z3w:B, 4z3w:D, 4z3x:A, 4z3x:B, 4z3x:C, 4z3x:D, 4z3y:A, 4z3y:B, 4z3y:C, 4z3y:D, 4z3z:A, 4z3z:B, 4z3z:C, 4z3z:D, 4z40:A, 4z40:B, 4z40:C, 4z40:D
20 8eyk:F 1070 53 0.1892 0.0131 0.2642 2.7
21 8eyi:F 1211 53 0.1892 0.0116 0.2642 3.2 4w9n:A, 4w9n:B, 4w9n:C, 4w9n:D
22 4dpv:Z 559 61 0.2838 0.0376 0.3443 3.2 1c8d:A, 1c8f:A, 1c8g:A, 1ijs:P, 1p5w:A, 4qyk:K, 4qyk:V, 4qyk:E, 4qyk:J, 4qyk:S, 4qyk:B, 4qyk:c, 4qyk:W, 4qyk:H, 4qyk:I, 4qyk:T, 4qyk:L, 4qyk:M, 4qyk:C, 4qyk:R, 4qyk:A, 4qyk:b, 4qyk:Y, 4qyk:d, 4qyk:F
23 5zal:A 1314 66 0.2703 0.0152 0.3030 3.7 2eb1:A, 2eb1:B, 2eb1:C, 4ngd:A, 5zam:A
24 7yym:A 1281 66 0.2703 0.0156 0.3030 4.2 4ngb:A, 4ngc:A, 4ngg:A, 4nh3:A, 4nh5:A, 4nh6:A, 7yyn:A, 7zpi:A, 7zpj:A, 7zpk:A
25 7xw2:A 725 66 0.2703 0.0276 0.3030 6.9
26 8i9r:Cf 147 23 0.1486 0.0748 0.4783 7.7 8i9t:Cf, 8i9v:Cf

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218