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BioLiP
>protein
PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIG

The query sequence (length=34) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7lp2:E 37 33 0.9706 0.8919 1.0000 1.99e-19 2lb2:A, 7lp2:A, 7lp2:C, 2lty:A
2 2n8t:A 39 31 0.5882 0.5128 0.6452 2.98e-12
3 7lp3:A 37 32 0.7059 0.6486 0.7500 3.28e-12 7lp3:C
4 5dws:C 40 30 0.5294 0.4500 0.6000 7.01e-09
5 6jjy:A 128 30 0.5000 0.1328 0.5667 1.36e-08 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
6 6jjy:A 128 30 0.3824 0.1016 0.4333 0.005 6j68:A, 6j68:B, 6j69:A, 6jjw:A, 6jjx:B, 6jjx:A
7 2djy:A 42 30 0.5588 0.4524 0.6333 1.49e-08
8 5cq2:A 76 30 0.5294 0.2368 0.6000 2.03e-08 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
9 5cq2:A 76 30 0.4706 0.2105 0.5333 3.14e-05 5dws:A, 5dws:E, 5dws:G, 5dzd:A, 5dzd:B, 2jo9:A, 4rof:A, 4rof:B
10 2lb1:A 35 30 0.5294 0.5143 0.6000 2.51e-08 2ltx:A
11 2kxq:A 90 30 0.5588 0.2111 0.6333 4.73e-08 2laz:A, 2lb0:A, 2ltz:A
12 2kxq:A 90 32 0.3235 0.1222 0.3438 0.010 2laz:A, 2lb0:A, 2ltz:A
13 4lcd:A 419 30 0.5000 0.0406 0.5667 2.31e-07 4lcd:B
14 2ltv:A 36 30 0.4412 0.4167 0.5000 3.02e-07 2law:A
15 1i5h:W 50 30 0.4412 0.3000 0.5000 6.19e-07
16 2m3o:W 43 30 0.4412 0.3488 0.5000 8.26e-07 2kpz:A, 2kq0:A, 2mpt:A, 4n7h:A
17 1jmq:A 46 30 0.4412 0.3261 0.5000 3.24e-06 1k5r:A, 1k9q:A, 1k9r:A, 2lax:A, 2lay:A, 2ltw:A
18 2laj:A 40 30 0.4412 0.3750 0.5000 6.23e-06
19 2jmf:A 43 30 0.4412 0.3488 0.5000 3.46e-05
20 2nc3:A 33 32 0.4412 0.4545 0.4688 3.54e-05 2nc4:A, 2nc5:A, 2nc6:A
21 6jjz:B 96 30 0.3824 0.1354 0.4333 8.64e-05 6jjz:A, 6kkg:A, 6kkg:B
22 6jjz:B 96 31 0.4412 0.1562 0.4839 0.001 6jjz:A, 6kkg:A, 6kkg:B
23 8sg2:A 163 33 0.4706 0.0982 0.4848 1.78e-04 6dun:A, 6dun:B, 7efj:A, 7efx:A, 7ekv:A, 7f0m:A, 7f0m:C, 7f0m:B, 7f0m:D, 1f8a:B, 4gwv:A, 3i6c:A, 3i6c:B, 1i8g:B, 1i8h:B, 3ikd:A, 3ikd:B, 3ikg:A, 3ikg:B, 9inr:A, 9inr:B, 2itk:A, 3jyj:A, 3jyj:B, 3kab:A, 3kac:A, 3kac:B, 3kad:A, 3kaf:A, 3kag:A, 3kah:A, 3kai:A, 3kce:A, 2lb3:A, 2n1o:A, 1nmw:A, 3ntp:A, 6o33:A, 6o34:A, 3odk:A, 3oob:A, 1pin:A, 2q5a:A, 3tc5:A, 3tcz:A, 3tdb:A, 4tns:A, 4tyo:A, 4tyo:B, 5uy9:A, 6vaj:A, 3wh0:A, 2xp3:A, 2xp4:A, 2xp5:A, 2xp6:A, 2xp7:A, 2xp8:A, 2xp9:A, 2xpa:A, 2xpb:A
24 2ez5:W 46 30 0.3529 0.2609 0.4000 0.001
25 8pxx:A 99 31 0.4118 0.1414 0.4516 0.002 2dyf:A
26 8pxx:A 99 26 0.2647 0.0909 0.3462 0.54 2dyf:A
27 2jup:W 37 28 0.3824 0.3514 0.4643 0.006 2rly:W, 2rm0:W
28 1eg4:A 260 26 0.2941 0.0385 0.3846 0.031
29 2oei:A 37 30 0.3824 0.3514 0.4333 1.2 2ho2:A
30 1z3a:A 156 31 0.3824 0.0833 0.4194 1.5 3ocq:A, 1z3a:B
31 2dym:G 262 32 0.2353 0.0305 0.2500 3.7 2dym:A, 2dym:E, 2dym:C, 3w1s:A
32 1dpp:A 507 38 0.3529 0.0237 0.3158 4.5 1dpp:C, 1dpp:E, 1dpp:G
33 4oge:A 977 21 0.2941 0.0102 0.4762 4.5 4ogc:A
34 1rm6:A 761 34 0.3824 0.0171 0.3824 5.1 1rm6:D, 1sb3:A, 1sb3:D
35 6m1y:A 938 26 0.2353 0.0085 0.3077 5.9 6m1y:B, 6m22:A, 6m22:B
36 3sy9:B 372 16 0.2059 0.0188 0.4375 8.3 3sy9:A, 3sy9:C, 3sy9:D
37 3wbw:A 271 19 0.2647 0.0332 0.4737 9.3 3wbw:B, 3wby:A, 3wby:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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