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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PGIAIIGAQWGDEGKGKVVDVLAREADYVIRYQGGANAGHTVVAEGKVFKLNLLPSGVIHPHAVNVLGDGMVIDPFRFQE
EVEGLRKEGFDPKILVSERAHLVLPHHKHVESRHNFVGTTGRGIGPAYSDRARRVGIRAGDLLDEATLRERVRRLLAEKP
NSTREAGWDTEEKALADLHRMREILSPYIADTGSLLREAWRKGKRLLFEGAQATLLDLNYGTYPYVTSSHPTVGGILVGT
GLSHKAITKVYGVAKAYTTRVGEGPFPTELQGELAHHLREKGGEYGTTTGRPRRVGWLDLVALRYACEVNGFDGLVLTKL
DVLSGLEKVKVAVEYLDGARPGEASPEAVRYLELPGWGDLSHVKRREDLPANLLRYLELVEEHTGVPVVLFSTSPRREDT
FGAVSWV

The query sequence (length=407) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6jrq:A 407 407 1.0000 1.0000 1.0000 0.0 6jrq:B, 6jrq:C, 6jrq:D
2 9f17:A 413 407 0.4447 0.4383 0.4447 2.77e-120 9f17:B, 7pvo:A, 8qwa:A, 6zxq:A
3 1dj3:A 432 417 0.4865 0.4583 0.4748 4.34e-119 1dj3:B
4 4m9d:B 431 418 0.4521 0.4269 0.4402 1.88e-113 4m9d:A
5 1dj2:A 429 418 0.4668 0.4429 0.4545 1.91e-113 1dj2:B
6 1cg0:A 431 421 0.4398 0.4153 0.4252 1.88e-110 1cg1:A, 1cg3:A, 1cg4:A, 1ch8:A, 1cib:A, 2gcq:A, 1gim:A, 1gin:A, 1hon:A, 1hoo:A, 1juy:A, 1kjx:A, 1kkb:A, 1kkf:A, 1ksz:A, 1nht:A, 1qf4:A, 1qf5:A, 1son:A, 1soo:A
7 5i34:A 429 421 0.4595 0.4359 0.4442 4.63e-106 5i34:B
8 1p9b:A 424 419 0.4054 0.3892 0.3938 1.99e-101
9 2dgn:A 431 417 0.4545 0.4292 0.4436 3.97e-101 1iwe:A, 1iwe:B, 1lny:A, 1lny:B, 1lon:A, 1loo:A, 1mez:A, 1mf0:A, 1mf1:A
10 2v40:A 419 410 0.4226 0.4105 0.4195 2.30e-99
11 6c25:A 394 416 0.3735 0.3858 0.3654 7.52e-80
12 5k7x:A 337 404 0.3120 0.3769 0.3144 4.57e-54 5k7x:B, 5k7x:C, 5k7x:D, 5k7x:E, 5k7x:F
13 7odx:A 350 348 0.2285 0.2657 0.2672 3.52e-17
14 6tnh:A 345 377 0.2457 0.2899 0.2653 1.22e-16 6fko:A, 6fko:B, 6fm1:A, 6fm1:B, 6rm2:A, 6rm2:B, 6tnh:B
15 7vf6:A 366 328 0.2162 0.2404 0.2683 1.27e-15 7vf6:B
16 6fm3:A 304 371 0.2334 0.3125 0.2561 8.50e-12 6fm0:A, 6fm0:B
17 5ya1:A 478 119 0.0934 0.0795 0.3193 0.005 5ya1:B, 5ya2:A, 5ya2:B
18 1onf:A 439 130 0.0860 0.0797 0.2692 0.10
19 6du7:A 448 106 0.0786 0.0714 0.3019 0.41 6du7:B, 6du7:C, 6du7:D, 6du7:E, 6du7:F, 6du7:G, 6du7:H
20 3qh8:A 272 76 0.0516 0.0772 0.2763 0.49 3md7:A, 3py5:A, 3py6:A
21 3fe5:A 283 64 0.0516 0.0742 0.3281 1.4
22 6f0y:A 172 51 0.0491 0.1163 0.3922 2.4 2ygv:A, 2ygv:D, 2ygv:B, 2ygv:C
23 5tk5:A 283 64 0.0491 0.0707 0.3125 5.0 5tkq:A
24 2wag:A 217 30 0.0270 0.0507 0.3667 6.9
25 8x5d:N 370 64 0.0467 0.0514 0.2969 7.1
26 1n5w:C 287 42 0.0369 0.0523 0.3571 7.1 1n5w:F, 1n60:C, 1n60:F, 1n61:C, 1n61:F, 1n62:C, 1n62:F, 1n63:C, 1n63:F, 1zxi:C, 1zxi:F
27 3wnb:A 361 71 0.0590 0.0665 0.3380 7.6 3wnc:A
28 1t8h:A 272 101 0.0663 0.0993 0.2673 8.9 6t0y:A, 6t1b:A
29 3djj:A 462 63 0.0541 0.0476 0.3492 9.1 2aaq:A, 1bwc:A, 3djg:X, 3dk4:A, 3dk8:A, 3dk9:A, 1dnc:A, 2gh5:A, 2gh5:B, 1gra:A, 1grb:A, 1gre:A, 1grf:A, 1grg:A, 1grh:A, 1grt:A, 2grt:A, 3grs:A, 3grt:A, 4gr1:A, 4grt:A, 5grt:A, 1gsn:A, 1k4q:A, 3sqp:A, 3sqp:B, 1xan:A
30 8d1v:A 1229 44 0.0344 0.0114 0.3182 9.1
31 8wmi:A 1237 44 0.0344 0.0113 0.3182 9.4
32 7y9x:A 1458 44 0.0344 0.0096 0.3182 9.5 8gs2:A
33 8eex:A 1284 44 0.0344 0.0109 0.3182 9.6
34 8wmc:A 1249 44 0.0344 0.0112 0.3182 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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