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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
PFSNSHNLLKMKYSVDDEYPDLSVHNNHMAKVLTLDLYKKLRDRQTSSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEES
YEVFKELFDPVIEDRHGGYKPTDEHKTDLNADNLQGGDDLDPNYVLSSRVRTGRSIRGFCLPPHCSRGERRAIEKLSVEA
LGSLGGDLKGKYYALRNMTDAEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKTFLVWINEEDHLRVISMQ
KGGNMKEVFTRFCTGLTQIETLFKSKNYEFMWNPHLGYILTCPSNLGTGLRAGVHIKLPNLGKHEKFGEVLKRLRLQKRG
TGGVDTAAVGGVFDVSNADRLGFSEVELVQMVVDGVKLLIEMEKRLEKGQSIDDLMPAQK

The query sequence (length=380) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1qh4:D 380 380 1.0000 1.0000 1.0000 0.0 3b6r:B, 3drb:B, 7tun:A, 7tun:B
2 1u6r:A 380 380 0.8053 0.8053 0.8053 0.0 2crk:A, 1u6r:B
3 1vrp:B 374 374 0.7868 0.7995 0.7995 0.0 1vrp:A
4 4z9m:C 375 356 0.6237 0.6320 0.6657 4.03e-179 4z9m:A, 4z9m:B, 4z9m:D, 4z9m:E, 4z9m:F, 4z9m:G, 4z9m:H
5 3ju5:C 367 372 0.6053 0.6267 0.6183 5.59e-164 3ju5:A, 3ju6:A
6 4v7n:BB 388 368 0.5474 0.5361 0.5652 2.62e-144 4v7n:AA, 4v7n:AB, 4v7n:AC, 4v7n:AD, 4v7n:AE, 4v7n:AF, 4v7n:AG, 4v7n:AH, 4v7n:AI, 4v7n:AJ, 4v7n:AK, 4v7n:AL, 4v7n:AM, 4v7n:AN, 4v7n:AO, 4v7n:AP, 4v7n:AQ, 4v7n:AR, 4v7n:BA, 4v7n:BC, 4v7n:BD, 4v7n:BE, 4v7n:BF, 4v7n:BG, 4v7n:BH, 4v7n:BI, 4v7n:BJ, 4v7n:BK, 4v7n:BL, 4v7n:BM, 4v7n:BN, 4v7n:BO, 4v7n:BP, 4v7n:BQ, 4v7n:BR
7 3jq3:A 364 361 0.5316 0.5549 0.5596 3.21e-144
8 4bg4:A 356 340 0.4105 0.4382 0.4588 1.80e-94 4bg4:B, 4bhl:A
9 4rf7:B 700 350 0.4132 0.2243 0.4486 3.74e-94 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B
10 4rf7:B 700 338 0.3816 0.2071 0.4290 9.61e-88 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B
11 1bg0:A 356 338 0.3974 0.4242 0.4467 1.17e-90 4gvy:A, 4gvz:A, 4gw0:A, 4gw2:A, 5j99:A, 5j9a:A, 1m15:A, 1p50:A, 1p52:A, 1rl9:A, 1sd0:A
12 5u92:A 347 338 0.3763 0.4121 0.4231 3.33e-84
13 6ky3:A 353 339 0.3895 0.4193 0.4366 6.22e-84
14 4woe:A 716 349 0.3579 0.1899 0.3897 8.72e-72 4wod:A, 4woe:B
15 4woe:A 716 341 0.3605 0.1913 0.4018 1.48e-70 4wod:A, 4woe:B
16 6fh2:A 353 250 0.1921 0.2068 0.2920 3.30e-20 6fh3:A, 6fh3:B
17 4bju:A 548 83 0.0684 0.0474 0.3133 0.18 4bju:B, 5o9x:A, 5oaw:A, 5oaw:B
18 7r04:A 2326 72 0.0605 0.0099 0.3194 1.5
19 3va7:A 1130 81 0.0605 0.0204 0.2840 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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