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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYG
IAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTP
EKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWE

The query sequence (length=223) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2goy:B 223 223 1.0000 1.0000 1.0000 3.20e-168 2goy:A, 2goy:C, 2goy:D, 2goy:E, 2goy:F, 2goy:G, 2goy:H
2 7lhr:A 214 205 0.3318 0.3458 0.3610 5.42e-27 7lhr:B, 7lhs:A, 7lhs:B, 7lhu:A, 7lhu:B
3 2oq2:C 257 217 0.2960 0.2568 0.3041 1.27e-15 2oq2:A, 2oq2:B, 2oq2:D
4 8rom:A 194 36 0.0673 0.0773 0.4167 0.001
5 7bc4:B 2054 33 0.0583 0.0063 0.3939 2.1
6 4ol8:F 427 26 0.0538 0.0281 0.4615 4.2 4ol8:A
7 5vcy:A 296 36 0.0493 0.0372 0.3056 4.3 8d6c:A, 8d6c:B, 8d6d:A, 8d6d:B, 8d6e:B, 8d6e:A, 8d6f:B, 8d6f:A, 5vcv:A, 5vcw:A, 5vcw:B, 5vcx:A, 5vcz:A, 5vd0:A, 5vd1:A, 5vd3:A, 8wjy:A, 8ztx:A, 8zu2:A, 8zud:A, 8zul:A
8 7aor:z 1071 49 0.0762 0.0159 0.3469 4.5
9 1zun:A 204 177 0.1839 0.2010 0.2316 5.7
10 5vgr:A 408 49 0.0583 0.0319 0.2653 6.3 5vgr:B, 6xjo:A, 6xjo:B
11 2cfm:A 561 64 0.0897 0.0357 0.3125 6.8
12 8qf8:A 776 52 0.0852 0.0245 0.3654 9.3 5opj:A, 8qf8:B, 6yqh:AAA
13 7ei0:A 241 53 0.0852 0.0788 0.3585 9.5 3bpf:A, 3bpf:B, 3bpf:C, 3bpf:D, 8gt7:C, 6jw9:A
14 3g5a:B 305 56 0.0628 0.0459 0.2500 9.6 3fwk:A, 3g59:A, 3g5a:A, 3g5a:C, 3g5a:D, 3g5a:E, 3g5a:F, 3g6k:A, 3g6k:B, 3g6k:C, 3g6k:D, 3g6k:E, 3g6k:F, 4kkv:A
15 8dg5:A 1635 57 0.0852 0.0116 0.3333 9.9 8dg7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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