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BioLiP
>protein
PEQQAAEWKLLLGQFPAPVVAQIRELATTHQSELPGYFYEQMGTLRQWIVSVFSMSDDDAALQALIAQQKQIGEIHARIK
IPIHLVLRGARHLRERLFVLLRQRPLDPEHKLFGQRLISETVDLAMEIMSRA

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4uii:A 132 132 1.0000 1.0000 1.0000 1.12e-93 4uii:B
2 6m9a:C 157 153 0.3258 0.2739 0.2810 3.55e-13 6i2z:A, 6i2z:B, 6m9a:A, 6m9a:B, 4uiq:A, 4uiq:B
3 4zvb:A 150 146 0.3333 0.2933 0.3014 4.13e-13 4zva:A, 4zva:B, 4zvb:B, 4zvb:C, 4zvb:D
4 2w31:A 152 87 0.1667 0.1447 0.2529 4.92e-04 2w31:B
5 1gt0:D 79 35 0.0985 0.1646 0.3714 0.38 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
6 6muu:A 780 19 0.0909 0.0154 0.6316 0.72 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
7 6o75:A 710 19 0.0909 0.0169 0.6316 0.73 6o74:A, 6o78:A, 6o79:A, 6o7b:A, 6o7d:A
8 8slm:A 248 45 0.1136 0.0605 0.3333 0.83 8sln:A
9 5lr8:A 844 80 0.1515 0.0237 0.2500 2.8 5lr8:B, 5lra:A, 5lra:B, 5lrb:B, 5lrb:A
10 8g0u:C 455 45 0.0985 0.0286 0.2889 5.4
11 7qv3:w 593 65 0.1439 0.0320 0.2923 6.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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