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BioLiP
>protein
PDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYSDIMVLCVLKGGYKFCADLVEH
LKNISRNSDRFVSMKVDFIRLKSYRNDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVA
SLLVKRTGFRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV

The query sequence (length=213) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jbh:B 213 213 1.0000 1.0000 1.0000 5.43e-158 2jbh:A
2 1bzy:A 214 212 0.6667 0.6636 0.6698 3.89e-103 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
3 5brn:B 194 210 0.6009 0.6598 0.6095 1.54e-87 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
4 2vfa:B 205 210 0.5446 0.5659 0.5524 4.36e-79 2vfa:A
5 3ozf:B 234 213 0.4460 0.4060 0.4460 3.10e-57 1cjb:A, 1cjb:B, 1cjb:C, 1cjb:D, 3ozf:A, 3ozf:C, 3ozf:D, 3ozg:A, 3ozg:B, 3ozg:C, 3ozg:D, 7tux:A, 7tux:B, 7tux:C, 7tux:D
6 5ipf:A 201 214 0.4460 0.4726 0.4439 4.50e-54 5ipf:B, 5ipf:C, 5ipf:D
7 6bo7:A 220 214 0.3803 0.3682 0.3785 4.57e-43 6bo7:B, 6bo7:C, 6bo7:D, 6bo7:E, 6bo7:F, 6bo7:G, 6bo7:H, 6bo7:I, 6bo7:J, 6bo7:K, 6bo7:L
8 1fsg:A 233 223 0.3568 0.3262 0.3408 1.52e-39 1dbr:A, 1dbr:B, 1dbr:D, 1fsg:C, 1qk3:A, 1qk3:B, 1qk3:C, 1qk3:D, 1qk4:A, 1qk4:B, 1qk4:C, 1qk4:D, 1qk5:A, 1qk5:B
9 4qyi:B 171 179 0.2676 0.3333 0.3184 6.31e-26 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
10 8fx3:B 223 156 0.2441 0.2332 0.3333 2.60e-25 8fwy:A, 8fwy:B, 8fwz:A, 8fwz:B, 8fx0:A, 8fx0:B, 8fx1:A, 8fx1:B, 8fx2:A, 8fx2:B, 8fx3:A
11 4pfq:C 184 188 0.3052 0.3533 0.3457 5.40e-25 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
12 3kb8:A 201 180 0.2864 0.3035 0.3389 4.05e-24 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
13 6mxc:C 220 156 0.2582 0.2500 0.3526 5.40e-23 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
14 6igs:B 167 177 0.2723 0.3473 0.3277 2.85e-22 6igs:A, 6igs:C, 6igs:D
15 5kny:B 187 188 0.2958 0.3369 0.3351 1.36e-19 5knp:A, 5knp:B, 5knp:C, 5knp:D, 5knq:A, 5knq:B, 5knq:C, 5knq:D, 5kny:A, 5kny:C, 5kny:D, 4rht:A, 4rht:B, 4rht:C, 4rht:D, 4rhu:A, 4rhu:B, 4rhu:C, 4rhu:D, 4rhu:E, 4rhu:F, 4rhx:A, 4rhx:B, 4rhx:C, 4rhx:D, 4rhy:A, 4rhy:B, 4rhy:C, 4rhy:D
16 7cmj:A 184 149 0.2441 0.2826 0.3490 1.71e-19 1pzm:A, 1pzm:B
17 1hgx:A 164 181 0.2629 0.3415 0.3094 4.12e-19
18 5knx:B 176 174 0.2676 0.3239 0.3276 1.28e-18 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
19 2geb:A 184 180 0.2723 0.3152 0.3222 2.85e-18 1r3u:A, 1r3u:B, 1yfz:A, 1yfz:B
20 1p17:B 204 188 0.2817 0.2941 0.3191 6.25e-18 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
21 3acc:A 166 168 0.2535 0.3253 0.3214 7.93e-18 3acd:A
22 6aps:A 185 155 0.2019 0.2324 0.2774 8.83e-15 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
23 5esw:A 190 172 0.2066 0.2316 0.2558 3.78e-12 5esx:A, 5esx:B
24 4zfn:B 177 79 0.1174 0.1412 0.3165 7.29e-05 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
25 4p86:A 177 126 0.1690 0.2034 0.2857 0.002 4p86:B, 4p86:C, 4p86:D
26 4trb:B 209 72 0.1080 0.1100 0.3194 0.012 4trc:A, 4trc:B, 4ts5:A, 4ts5:B, 4ts7:A, 4ts7:B
27 2igb:B 173 124 0.1549 0.1908 0.2661 0.026 2igb:A, 4p83:A, 4p83:B, 4p83:C, 4p83:D, 1xz8:A, 1xz8:B, 1xzn:A, 1xzn:B
28 7f06:A 181 81 0.1080 0.1271 0.2840 0.34 7f06:B
29 1b8t:A 192 57 0.0704 0.0781 0.2632 1.0 1ctl:A
30 2jky:A 207 28 0.0704 0.0725 0.5357 1.9 2jky:B, 2jkz:A, 2jkz:B, 2jkz:C, 2jkz:D, 2xbu:A, 2xbu:B
31 6bwc:C 327 35 0.0751 0.0489 0.4571 2.4 6bwc:A, 6bwc:B, 6bwc:D, 6bwc:E, 6bwc:F
32 3s5u:E 213 51 0.0845 0.0845 0.3529 3.7 3s5u:A, 3s5u:B, 3s5u:C, 3s5u:D, 3s5u:F, 3s5u:G, 3s5u:H
33 8tux:m 448 52 0.0845 0.0402 0.3462 4.0 8tux:M
34 7wrg:B 783 24 0.0563 0.0153 0.5000 4.7
35 7wrg:A 812 24 0.0563 0.0148 0.5000 4.7
36 4bql:A 436 51 0.0798 0.0390 0.3333 5.1 4bql:B, 4bql:D, 4cj7:A, 4cj7:B, 5ly3:A, 5mw1:B, 5mw1:A, 5mw1:C, 5mw1:D, 5mw1:E, 5mw1:F
37 5iao:A 171 56 0.0704 0.0877 0.2679 5.2 5iao:C, 5iao:F
38 5yw5:A 178 36 0.0751 0.0899 0.4444 5.4 5yw5:B, 5yw5:C, 5yw5:D
39 5hkl:A 168 47 0.0610 0.0774 0.2766 5.6 5hkf:A
40 6wmr:Z 470 134 0.1268 0.0574 0.2015 5.7 6wmt:Z
41 5hkf:B 166 47 0.0610 0.0783 0.2766 5.9
42 8bxl:B 590 56 0.0751 0.0271 0.2857 6.9 8bxl:C, 8bxl:D, 8bxl:A, 8bxl:F, 8bxl:E
43 6fci:A 179 38 0.0516 0.0615 0.2895 7.2 6fch:A, 6fch:B, 6fci:D, 6fci:B, 6fci:C, 6fcl:A, 6fcl:B, 6fd4:B, 6fd4:A, 6fd5:A, 6fd5:B, 6fd6:A, 6fd6:B, 6hgp:A, 6hgq:A, 6hgq:C, 6hgq:D, 6hgq:B, 6hgr:A, 6hgr:B, 6hgs:A, 6hgs:B, 1ore:A, 4x44:A, 4x45:B, 1zn7:A, 1zn7:B, 1zn8:A, 1zn8:B, 1zn9:B
44 5elx:A 391 53 0.0751 0.0409 0.3019 8.5 3peu:A, 3pev:A, 3pew:A, 3pey:A, 3rrm:A, 3rrn:A
45 8b1t:B 1141 123 0.1502 0.0280 0.2602 9.2 8b1u:B, 7mr3:B, 6sjb:B, 6sje:B, 6sjf:B, 6sjg:B, 6t2u:B, 6t2v:B
46 8b1r:B 1170 123 0.1502 0.0274 0.2602 9.2 3k70:B, 3k70:E, 5ld2:B, 7mr4:B, 1w36:B, 1w36:E
47 4m0k:C 176 45 0.0704 0.0852 0.3333 9.6 4m0k:A, 4m0k:B, 4m0k:D
48 4bru:A 375 31 0.0516 0.0293 0.3548 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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