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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PCCEVITNVNLPDDNVQSTLSQIENAIDVMLGYIMSNYDYQKNLRFGGSNEAYCFVRITSINNNSALADQITKLLVSNLN
VKSRRIYVEFRDA

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4p7m:A 104 96 0.9677 0.8654 0.9375 5.29e-57 4p7s:A, 4p7s:B, 4p7s:C
2 3gac:E 115 101 0.6989 0.5652 0.6436 1.42e-42
3 8ur2:B 99 97 0.2688 0.2525 0.2577 1.06e-04
4 1gcz:A 118 92 0.2151 0.1695 0.2174 0.031 6b1c:A, 6b1c:C, 6b1c:B, 6b1k:A, 6b1k:C, 6b1k:B, 6b2c:A, 6b2c:B, 5b4o:A, 5b4o:B, 5b4o:C, 3b9s:A, 3b9s:B, 3b9s:C, 9bnq:A, 9bnq:B, 9bnq:C, 9bnr:A, 9bnr:B, 9bnr:C, 1ca7:A, 1ca7:C, 1ca7:B, 8ca0:A, 6cb5:A, 6cb5:C, 6cb5:B, 6cbf:A, 6cbf:C, 6cbf:B, 6cbg:A, 6cbg:B, 6cbg:C, 6cbh:B, 6cbh:C, 3dji:B, 7e45:B, 7e45:C, 7e47:B, 7e47:C, 7e49:A, 7e49:B, 7e4a:A, 7e4a:B, 7e4a:C, 7e4b:A, 7e4b:B, 7e4c:A, 7e4c:B, 4f2k:A, 4f2k:B, 4f2k:C, 6fve:A, 6fve:C, 6fve:B, 6fvh:A, 6fvh:B, 6fvh:C, 1gcz:C, 1gcz:B, 4grq:C, 4grr:B, 3hof:B, 3hof:C, 5hvs:A, 5hvs:C, 5hvs:B, 5hvt:A, 5hvt:B, 5hvt:C, 3ijg:C, 3ijj:A, 3ijj:C, 3ijj:B, 5j7p:A, 5j7p:C, 5j7p:B, 5j7q:A, 3jsf:A, 3jsf:B, 3jsf:C, 3jsg:A, 3jsg:B, 3jsg:C, 3jtu:A, 3jtu:B, 3jtu:C, 4k9g:A, 4k9g:B, 4k9g:C, 3l5p:A, 3l5r:A, 3l5r:C, 3l5s:A, 3l5t:A, 3l5u:A, 3l5u:C, 3l5u:B, 1ljt:A, 1ljt:B, 1ljt:C, 2ooh:B, 2ooh:C, 2ooh:A, 2oow:A, 2oow:C, 2ooz:A, 2ooz:B, 2ooz:C, 4osf:A, 4osf:C, 4osf:B, 4oyq:A, 4oyq:B, 4oyq:C, 4p01:A, 4p01:B, 6peg:E, 6peg:F, 4pkk:A, 4pkk:B, 4pkk:C, 4plu:A, 4plu:B, 4plu:C, 3smb:A, 3smb:B, 3smb:C, 3smc:A, 3smc:B, 3smc:C, 8son:A, 8son:B, 8spn:C, 4trf:A, 4trf:B, 4trf:C, 8tt9:A, 8tt9:C, 8tt9:B, 3u18:A, 3wnr:A, 3wnr:B, 3wnr:C, 3wns:A, 3wns:B, 3wns:C, 3wnt:A, 3wnt:B, 3wnt:C, 4wr8:B, 4wr8:C, 4wr8:E, 4wr8:F, 4wr8:H, 4wr8:I, 4wr8:K, 4wr8:L, 4wr8:N, 4wr8:O, 4wr8:Q, 4wr8:R, 4wrb:A, 4wrb:C, 5xej:A, 7xtx:B
5 2a21:A 263 77 0.1935 0.0684 0.2338 0.14 2a21:B, 2a2i:A, 2a2i:B, 3e0i:A, 3e0i:B, 3e12:A, 3e12:B, 2ef9:A, 2ef9:B, 1fwn:A, 1fwn:B, 1fws:A, 1fws:B, 1fwt:A, 1fwt:B, 1fww:A, 1fww:B, 1fx6:A, 1fx6:B, 1fxp:A, 1fxp:B, 1fxq:A, 1fxq:B, 1fy6:A, 1fy6:B, 1jcx:A, 1jcx:B, 1jcy:A, 1jcy:B, 1lrn:A, 1lrn:B, 1lro:A, 1lro:B, 1lrq:A, 1lrq:B, 2nwr:A, 2nwr:B, 2nws:A, 2nws:B, 2nx1:A, 2nx1:B, 2nx3:A, 2nx3:B, 2nx3:C, 2nx3:D, 2nx3:E, 2nx3:F, 2nx3:G, 2nx3:H, 2nx3:I, 2nx3:J, 2nx3:K, 2nx3:L, 2nxg:A, 2nxg:B, 2nxh:A, 2nxh:B, 2nxh:C, 2nxh:D, 2nxh:E, 2nxh:F, 2nxh:G, 2nxh:H, 2nxh:I, 2nxh:J, 2nxh:K, 2nxh:L, 2nxi:A, 2nxi:B, 2nxi:C, 2nxi:D, 2nxi:E, 2nxi:F, 2nxi:G, 2nxi:H, 2nxi:I, 2nxi:J, 2nxi:K, 2nxi:L, 1pck:A, 1pck:B, 1pcw:A, 1pcw:B, 1pe1:A, 1pe1:B, 1t8x:A, 1t8x:B, 1t96:A, 1t96:B, 1zha:A, 1zha:B, 1zji:A, 1zji:B
6 1gyx:B 76 38 0.1290 0.1579 0.3158 2.1 1gyy:A, 1gyy:B
7 6z42:A 336 62 0.1613 0.0446 0.2419 2.5 6z42:B, 6z42:C, 6z42:D
8 7nay:A 322 44 0.1505 0.0435 0.3182 4.1
9 3u57:A 471 41 0.1613 0.0318 0.3659 4.2 4atl:A, 4atl:B, 4ek7:A, 4ek7:B, 3u57:B, 3u5y:A, 3u5y:B, 3zj6:A, 3zj6:B
10 2jf6:B 472 37 0.1290 0.0254 0.3243 5.4 2jf6:A, 3zj7:A, 3zj7:B, 3zj8:A, 3zj8:B
11 7xi3:A 287 38 0.1183 0.0383 0.2895 7.2
12 3gid:A 460 17 0.0968 0.0196 0.5294 7.6 3gid:B
13 3jrx:A 496 17 0.0968 0.0181 0.5294 7.7 5kkn:B, 5kkn:C
14 8g9f:D 381 43 0.1398 0.0341 0.3023 9.2 8v5m:D, 8v5n:D, 8v5o:D, 8v6g:D, 8v6h:D, 8v6i:D, 8v6j:D
15 4v8m:BJ 214 28 0.1183 0.0514 0.3929 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417