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BioLiP
>protein
PATVAELQAEIAAWIHPLNPDRRPGGTIAKLLEEIGELIASDRDPLEVADVLILALDLATLLGVDVTEAIRAKLAINRAR
SWARADNGAMRHIPGSDTP

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ody:C 100 98 0.9697 0.9600 0.9796 3.35e-61 7ody:A, 7ody:B, 7ody:D
2 2q5z:B 94 92 0.2626 0.2766 0.2826 0.084 2q5z:A, 2q73:A, 2q73:B, 2q73:C, 2q73:D, 2q9l:A, 2q9l:B, 2q9l:C, 2q9l:D
3 6sqw:A 114 34 0.1414 0.1228 0.4118 0.26 2oig:B, 2oig:A, 2oig:D, 6sqw:D, 6sqy:A, 6sqy:D, 6sqz:A, 6sqz:D
4 7mu5:A 110 34 0.1515 0.1364 0.4412 0.62 7mu5:E, 7mu5:B, 7mu5:H, 7mu5:C, 7mu5:D, 7mu5:F, 7mu5:G
5 5iit:C 357 62 0.2121 0.0588 0.3387 3.0 3iid:A, 3iif:A, 3iif:B, 3iif:C, 5iit:B
6 6ax9:A 340 58 0.1919 0.0559 0.3276 6.0 6axm:A, 6axn:A, 6axu:A, 3kb9:A, 7kj8:A, 7kj9:A, 7kjd:A, 7kje:A, 7kjf:A, 7kjg:A, 3lg5:A, 4ltz:A, 4luu:A, 4lxw:A, 4lz0:A, 4lz3:A, 4lzc:A, 6ofv:A, 8su1:A, 8su2:A, 8su3:A, 8su4:A, 8su5:A, 8v3k:A
7 7xn7:m 1187 17 0.0909 0.0076 0.5294 6.4 7xse:m, 7xsx:m, 7xsz:m, 7xt7:m, 7xtd:m, 7xti:m
8 6nu8:A 488 43 0.1818 0.0369 0.4186 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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