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BioLiP
>protein
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIV
AGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAH
IHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The query sequence (length=238) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3lkt:M 238 238 1.0000 1.0000 1.0000 0.0 3lkt:N, 3lkt:O, 3lkt:P, 3lkt:Q, 3lkt:R, 3lmx:M, 3lmx:N, 3lmx:O, 3lxv:M, 3lxv:N, 3lxv:O, 3mfl:M, 3mfl:N, 3mfl:O, 3mi1:M, 3mi1:N, 3mi1:O, 3mi5:M, 3mi5:N, 3mi5:O, 3mi5:P, 3mi5:Q, 3mi5:R, 3mv4:M, 3mv4:N, 3mv4:O, 3mv6:M, 3mv6:N, 3mv6:O, 2pcd:M, 2pcd:N, 2pcd:O, 2pcd:P, 2pcd:Q, 2pcd:R, 3pca:M, 3pca:N, 3pca:O, 3pca:P, 3pca:Q, 3pca:R, 3pcb:M, 3pcb:N, 3pcb:O, 3pcb:P, 3pcb:Q, 3pcb:R, 3pcc:M, 3pcc:N, 3pcc:O, 3pcc:P, 3pcc:Q, 3pcc:R, 3pcd:M, 3pcd:N, 3pcd:O, 3pcd:P, 3pcd:Q, 3pcd:R, 3pce:M, 3pce:N, 3pce:O, 3pce:P, 3pce:Q, 3pce:R, 3pcf:M, 3pcf:N, 3pcf:O, 3pcf:P, 3pcf:Q, 3pcf:R, 3pcg:M, 3pcg:N, 3pcg:O, 3pcg:P, 3pcg:Q, 3pcg:R, 3pch:M, 3pch:N, 3pch:O, 3pch:P, 3pch:Q, 3pch:R, 3pci:M, 3pci:N, 3pci:O, 3pci:P, 3pci:Q, 3pci:R, 3pcj:M, 3pcj:N, 3pcj:O, 3pcj:P, 3pcj:Q, 3pcj:R, 3pck:M, 3pck:N, 3pck:O, 3pck:P, 3pck:Q, 3pck:R, 3pcl:M, 3pcl:N, 3pcl:O, 3pcl:P, 3pcl:Q, 3pcl:R, 3pcm:M, 3pcm:N, 3pcm:O, 3pcm:P, 3pcm:Q, 3pcm:R, 3pcn:M, 3pcn:N, 3pcn:O, 3pcn:P, 3pcn:Q, 3pcn:R, 3t63:M, 3t63:N, 3t63:O, 3t67:M, 3t67:N, 3t67:O, 4who:B, 4who:D, 4who:F, 4whp:F, 4whp:D, 4whp:B, 4whq:F, 4whq:D, 4whq:B, 4whr:D, 4whr:B, 4whr:F, 4whs:F, 4whs:D, 4whs:B, 1ykk:B, 1ykk:D, 1ykk:F, 1ykk:H, 1ykk:J, 1ykk:L, 1ykl:B, 1ykl:D, 1ykl:F, 1ykl:H, 1ykl:J, 1ykl:L, 1ykm:B, 1ykm:D, 1ykm:F, 1ykm:H, 1ykm:J, 1ykm:L, 1ykn:B, 1ykn:D, 1ykn:F, 1ykn:H, 1ykn:J, 1ykn:L, 1yko:B, 1yko:D, 1yko:F, 1yko:H, 1yko:J, 1yko:L, 1ykp:B, 1ykp:D, 1ykp:F, 1ykp:H, 1ykp:J, 1ykp:L
2 2bum:B 238 230 0.5546 0.5546 0.5739 3.06e-95 2buq:B, 2bur:B, 2but:B, 2buu:B, 2buv:B, 2buw:B, 2bux:B, 2buy:B, 2buz:B, 2bv0:B, 1eo2:B, 1eo9:B, 1eoa:B, 1eob:B, 1eoc:B
3 2buq:A 202 207 0.2815 0.3317 0.3237 5.33e-22 2buu:A, 2buy:A, 2buz:A
4 2boy:A 253 118 0.1891 0.1779 0.3814 8.64e-18 2boy:B, 2boy:C, 2boy:D, 2boy:E, 2boy:F, 2boy:G, 2boy:H
5 3lxv:A 200 206 0.2647 0.3150 0.3058 1.18e-16 3lxv:B, 3lxv:C, 3mfl:A, 3mfl:B, 3mfl:C, 3mi5:A, 3mi5:B, 3mi5:C, 3mi5:D, 3mi5:E, 3mi5:F, 3pcb:F, 3pce:C, 3pce:E, 3pcf:A, 3pcf:B, 3pcf:C, 3pcf:D, 3pcf:E, 3pcf:F, 3pcg:C, 3pcg:D, 3pch:A, 3pch:B, 3pch:C, 3pch:D, 3pch:E, 3pci:A, 3pci:B, 3pci:C, 3pci:D, 3pci:E, 3pci:F, 3pcl:A, 3pcl:F, 3pcm:F, 3pcn:A, 3pcn:C, 3pcn:D, 3pcn:F, 3t67:A, 3t67:B, 3t67:C, 4who:A, 4whp:C, 4whq:A, 4whq:E, 4whq:C, 4whr:A, 4whr:E, 4whr:C, 4whs:A, 4whs:E, 4whs:C
6 3o32:A 256 135 0.1891 0.1758 0.3333 3.25e-12 3o32:B, 3o5u:A, 3o5u:B, 3o6j:A, 3o6j:B, 3o6r:A, 3o6r:B, 1s9a:A, 1s9a:B
7 5umh:B 310 125 0.1933 0.1484 0.3680 7.43e-12 5umh:A
8 1dlm:A 309 134 0.1975 0.1521 0.3507 2.28e-11 1dlm:B, 1dlq:A, 1dlq:B, 1dlt:A, 1dlt:B, 1dmh:A, 1dmh:B
9 5vxt:B 312 125 0.1975 0.1506 0.3760 2.81e-11 5td3:A, 5td3:B, 5vxt:A
10 3n9t:A 286 131 0.1807 0.1503 0.3282 4.47e-11
11 3hgi:A 258 135 0.1765 0.1628 0.3111 9.16e-11 3hhx:A, 3hhy:A, 3hj8:A, 3hjq:A, 3hjs:A, 3hkp:A, 3i4v:A, 3i4y:A, 3i51:A
12 1tmx:A 292 118 0.1555 0.1267 0.3136 4.33e-10 1tmx:B
13 4ilv:B 157 110 0.1555 0.2357 0.3364 2.21e-09 4ilt:A, 4ilt:B, 4ilt:C, 4ilt:D, 4ilv:A
14 2azq:A 309 120 0.1597 0.1230 0.3167 1.50e-08
15 3th1:A 246 116 0.1513 0.1463 0.3103 4.51e-08 3th1:B, 3th1:C
16 2xsr:A 309 120 0.1429 0.1100 0.2833 5.63e-06 2xsu:A, 2xsv:A
17 5vg2:A 204 115 0.1387 0.1618 0.2870 0.007 6bdj:A, 6bdj:U, 5vg2:U, 5vg2:B, 5vg2:C
18 4q51:A 264 67 0.0966 0.0871 0.3433 1.0
19 2gsd:A 399 50 0.0756 0.0451 0.3600 1.1
20 4nl8:A 549 56 0.0798 0.0346 0.3393 2.6
21 5nja:D 444 57 0.0756 0.0405 0.3158 3.5 5nja:B
22 6ofc:B 669 83 0.0840 0.0299 0.2410 5.0 3dla:A, 3dla:D, 3dla:C, 6ofc:A, 6ofc:D, 6ofc:C, 3seq:A, 3seq:B, 3sez:A, 3sez:B, 3syt:A, 3syt:B, 3syt:C, 3szg:A, 3szg:D, 3szg:C
23 1uwy:A 393 20 0.0462 0.0280 0.5500 6.8
24 1r18:A 223 30 0.0504 0.0538 0.4000 8.0
25 7en2:B 1410 38 0.0630 0.0106 0.3947 9.9 7emy:A, 7emy:B, 7en1:A, 7en1:B, 7en2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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