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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
PAFDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPDFLAKFDYYMPAIAGCREAIKRIAY
EFVEMKAKEGVVYVEVRYSPHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCMRHQPNWSPK
VVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQEAVKSGIHRTVHAGEVGSAEVVKEAVDILKTERLGHGYHTLE
DQALYNRLRQENMHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPLIFKSTLDTDYQMTKRDMGFTEEEFKR
LNINAAKSSFLPEDEKRELLDLLYKAYGMPPS

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3iar:A 360 352 1.0000 0.9778 1.0000 0.0 2bgn:E, 2bgn:F, 2bgn:G, 2bgn:H, 2e1w:A, 1krm:A, 1ndv:A, 1ndw:A, 1ndy:A, 1ndz:A, 1o5r:A, 1qxl:A, 7rtg:A, 7rtg:B, 1uml:A, 1v79:A, 1v7a:A, 1vfl:A, 1w1i:E, 1w1i:F, 1w1i:G, 1w1i:H, 1wxy:A, 1wxz:A, 2z7g:A
2 1a4l:A 349 347 0.8210 0.8281 0.8329 0.0 1a4l:B, 1a4l:C, 1a4l:D, 1a4m:A, 1a4m:B, 1a4m:C, 1a4m:D, 1add:A, 2ada:A, 1fkw:A, 1fkx:A, 3km8:A, 3km8:B, 3mvi:A, 3mvi:B, 3t1g:A, 1uio:A, 1uip:A
3 6n9m:A 331 339 0.3239 0.3444 0.3363 2.90e-47
4 6n91:A 334 332 0.2898 0.3054 0.3072 3.93e-42 6n91:B
5 3ou8:B 314 323 0.2415 0.2707 0.2632 8.34e-31 3ou8:A, 3pan:A, 3pan:B, 3pao:A, 3pao:B, 3pbm:A, 3pbm:B
6 4gxw:A 369 336 0.2642 0.2520 0.2768 4.75e-30 4gxw:B
7 3rys:A 335 340 0.2557 0.2687 0.2647 1.01e-28 3rys:B
8 2amx:A 364 351 0.2898 0.2802 0.2906 1.72e-28 2amx:B
9 3ewd:A 364 354 0.2699 0.2610 0.2684 9.01e-27 3ewc:A, 2pgf:A, 2pgr:A, 2qvn:A
10 6ii7:A 355 344 0.2585 0.2563 0.2645 6.73e-25
11 6ijn:A 341 354 0.2756 0.2845 0.2740 8.06e-21 6ijm:A, 6ijp:A, 6iv5:A, 6j23:A, 6j4t:A
12 8qch:H 350 344 0.2216 0.2229 0.2267 3.28e-12 8qch:A, 8qch:B, 8qch:C, 8qch:D, 8qch:E, 8qch:F, 8qch:G
13 3lgd:A 482 191 0.1477 0.1079 0.2723 9.49e-05 3lgd:B, 3lgg:A, 3lgg:B
14 8bwy:C 4264 141 0.0994 0.0082 0.2482 0.31
15 7moq:C 4159 141 0.0994 0.0084 0.2482 0.32 6zyy:C
16 7ezx:k6 285 134 0.0938 0.1158 0.2463 0.33 7ezx:kH, 6kgx:31, 6kgx:34, 7y4l:fA, 7y4l:hA, 7y5e:fB, 7y5e:hB, 7y7a:fA, 7y7a:hA, 7y7a:fW, 7y7a:hW
17 6zyw:C 4433 141 0.0994 0.0079 0.2482 0.34
18 7d4c:A 595 38 0.0426 0.0252 0.3947 1.2 7c3h:A, 7c3h:B, 7c3i:A, 7c3i:B, 7c3j:A, 7c3j:B, 7c3l:A, 7c3l:B, 7d4d:A, 7d4e:A, 3x0v:A, 3x0v:B
19 8cbc:A 455 50 0.0568 0.0440 0.4000 2.9 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
20 8ox4:A 870 200 0.1278 0.0517 0.2250 3.0
21 4efc:A 452 53 0.0568 0.0442 0.3774 3.6 4efc:B
22 8oxa:A 1035 200 0.1278 0.0435 0.2250 3.6 8ox5:A, 8oxb:A, 8oxc:A
23 6gwu:A 208 60 0.0483 0.0817 0.2833 4.3 6gwu:B, 6gwu:C, 6gwu:D
24 7qv7:S 571 54 0.0398 0.0245 0.2593 4.4 7qv7:Y
25 8ox8:A 1125 49 0.0455 0.0142 0.3265 5.7 8ox7:A, 8ox9:A, 7py4:A, 7vgj:A
26 7vgh:B 1183 49 0.0455 0.0135 0.3265 5.7 7vgi:B
27 7qh8:A 471 38 0.0341 0.0255 0.3158 6.3 7qhn:A, 7qi8:A
28 4lec:A 202 78 0.0511 0.0891 0.2308 6.5 4lec:B
29 6m7y:A 952 63 0.0398 0.0147 0.2222 6.7 6m7y:B
30 4ozv:A 333 55 0.0483 0.0511 0.3091 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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