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BioLiP
>protein
PADHWGIDSINYLVEKGAVFEPGKELTRAEAATMMAQILNLPIDKDAKPSFADSQGQWYTPFIAAVEKAGVIKGTGNGFE
PNGKIDRVSMASLLVEAYKLDTKVNGTPATKFKDLETLNWGKEKANILVELGISVGTGDQWEPKKTVTKAEAAQFIAKTD
KQFGT

The query sequence (length=165) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bt4:A 165 165 1.0000 1.0000 1.0000 8.59e-120
2 2v0n:A 459 70 0.1030 0.0370 0.2429 1.3 2v0n:B, 1w25:A, 1w25:B, 2wb4:A, 2wb4:B
3 7s7j:A 84 59 0.0970 0.1905 0.2712 2.0
4 1p77:A 265 43 0.1030 0.0642 0.3953 5.2
5 6cvq:A 180 40 0.0788 0.0722 0.3250 5.7 6cvo:A, 6cvo:B, 6cvp:A, 6cvp:B, 6cvq:B, 6cvr:A, 6cvr:B, 6cvs:A, 6cvs:B, 6cvt:A, 6cvt:B, 4ndf:A, 4ndf:B, 4ndg:A, 4ndg:B, 4ndh:A, 4ndh:B, 4ndi:A, 4ndi:B
6 6zca:Y 1127 63 0.1212 0.0177 0.3175 5.7 6zfb:Y, 6zfb:y
7 6wvk:D 1184 63 0.1212 0.0169 0.3175 5.8 6wvj:D
8 3fwr:B 146 93 0.1394 0.1575 0.2473 6.1 3fwr:A, 3fws:A, 3fws:B
9 7f75:D 1142 66 0.1212 0.0175 0.3030 6.6 7ckq:D
10 8s9u:D 518 68 0.1152 0.0367 0.2794 8.7 8s9t:D, 8s9v:D, 8s9x:D
11 8wfl:A 552 23 0.0545 0.0163 0.3913 9.0 8wfi:A, 8wfj:A, 8wfk:A, 6zbv:A, 6zpl:B, 6zpl:A
12 4a35:A 441 41 0.0848 0.0317 0.3415 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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