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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NVPDMQKRETLNLLLLGALSLPTGYMLLPYASFFVPPGGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVV
ESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTG
EAPWWSA

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rqf:L 179 172 1.0000 0.9330 0.9709 1.02e-121 7qrm:D, 7qrm:L, 1rfs:A, 6rqf:D, 7zyv:D, 7zyv:L
2 7r0w:D 169 171 0.6108 0.6036 0.5965 4.68e-70 7r0w:L, 7zxy:D, 7zxy:L
3 2d2c:D 168 167 0.5928 0.5893 0.5928 2.91e-69 2d2c:Q, 2e74:D, 2e75:D, 2e76:D, 4h0l:D, 4h13:D, 4i7z:D, 4pv1:D, 1vf5:D, 1vf5:Q
4 1q90:C 126 124 0.5569 0.7381 0.7500 4.85e-69
5 4h44:D 166 171 0.5868 0.5904 0.5731 1.86e-66 4ogq:D, 2zt9:D
6 3azc:A 133 129 0.5090 0.6391 0.6589 1.56e-63
7 8hn2:A 110 76 0.1737 0.2636 0.3816 4.06e-15 8hn2:B
8 8iuf:QE 231 59 0.1677 0.1212 0.4746 1.63e-12 8iuf:Qe, 8iuj:QE, 8iuj:Qe
9 8ab7:P 186 58 0.1617 0.1452 0.4655 2.95e-11 8ab7:E, 8ab8:P, 8ab9:P, 8aba:P, 8abb:P, 8abe:P, 8abf:P, 8abg:P, 8abh:P, 8abi:P, 8abj:P, 8abk:P, 8abm:P, 8ac3:P, 8ac4:P, 8ac5:P
10 8q1b:E 182 57 0.1617 0.1484 0.4737 3.38e-11 8q1b:P
11 2a06:E 196 58 0.1617 0.1378 0.4655 9.63e-11 2a06:R, 1bcc:E, 2bcc:E, 3bcc:E, 1be3:E, 1bgy:Q, 4d6t:R, 4d6u:R, 7dkf:Q1, 2fyu:E, 5gpn:E, 5gpn:Q, 5gup:2, 5gup:4, 6haw:E, 8iog:C, 8iog:c, 5j4z:AE, 5j4z:AP, 5j7y:AE, 5j7y:AP, 5j8k:AE, 5j8k:AP, 5klv:E, 1l0l:E, 1l0n:E, 5luf:q, 6nhg:E, 5nmi:E, 1ntk:E, 1ntm:E, 1ntz:E, 1nu1:E, 7o37:E, 7o37:P, 7o3c:E, 7o3c:P, 7o3h:E, 7o3h:P, 5okd:E, 8p65:E, 8p65:R, 1pp9:R, 1pp9:E, 1ppj:R, 1ppj:E, 8pw5:E, 8pw5:P, 8pw6:E, 8pw6:P, 8pw7:E, 8pw7:P, 6q9e:f1, 6q9e:f2, 6qbx:f1, 6qbx:f2, 6qc2:f1, 6qc2:f2, 6qc3:f1, 6qc3:f2, 6qc4:f1, 6qc4:f2, 7r3v:E, 1rie:A, 1sqb:E, 1sqp:E, 1sqq:E, 1sqv:E, 1sqx:E, 7tay:E, 7tz6:E, 7tz6:R, 8ugd:3E, 8ugd:3R, 8uge:3E, 8uge:3R, 8ugf:3E, 8ugf:3R, 8ugg:3E, 8ugg:3R, 8ugh:3E, 8ugh:3R, 8ugi:3E, 8ugi:3R, 8ugj:3E, 8ugj:3R, 8ugk:3E, 8ugk:3R, 8ugn:3E, 8ugn:3R, 8ugr:3E, 8ugr:3R, 8ugr:6E, 8ugr:6R, 5xte:C, 5xte:P, 5xth:AC, 5xth:AP, 5xti:AC, 5xti:AP, 6xvf:E, 2ybb:e, 2ybb:E, 6zfs:E, 6zft:E, 6zfu:E
12 3cx5:P 185 56 0.1557 0.1405 0.4643 1.21e-10 3cx5:E, 3cxh:P, 3cxh:E, 8e7s:C, 8e7s:c, 8ec0:C, 8ec0:c, 1ezv:E, 6giq:E, 6giq:P, 6hu9:E, 6hu9:P, 2ibz:E, 1kb9:E, 1kyo:E, 1kyo:P, 1p84:E, 4pd4:E, 6t0b:E, 6t0b:P, 6t15:E, 6t15:P, 6ymx:E, 6ymx:P
13 7rja:C 181 57 0.1497 0.1381 0.4386 2.49e-10 7rja:M, 7rjb:E, 7rjc:E, 7rjd:E, 7rje:C, 7rje:M
14 5cxm:A 99 53 0.1317 0.2222 0.4151 1.28e-09 5cxm:B, 5cxm:C, 5cxm:D
15 8ibd:AE 109 40 0.1377 0.2110 0.5750 1.32e-09 8ibg:AE
16 8asi:E 181 100 0.2096 0.1934 0.3500 1.38e-09 8asi:A, 8asj:A, 8asj:E, 2fyn:C, 2fyn:F, 2fyn:I, 2fyn:L, 2fyn:O, 2fyn:R, 5kkz:G, 5kkz:C, 5kkz:Q, 5kkz:M, 5kli:C, 5kli:G, 5kli:M, 5kli:Q, 6nhh:C, 6nhh:G, 6nin:C, 6nin:G, 6nin:M, 6nin:Q, 6nin:U, 6nin:Y, 2nuk:A, 2num:A, 2nve:A, 2nvf:A, 2nvg:A, 2nwf:A, 2qjk:C, 2qjk:F, 2qjk:I, 2qjk:L, 2qjk:O, 2qjk:R, 2qjp:F, 2qjp:C, 2qjp:L, 2qjp:I, 2qjy:F, 2qjy:C, 2qjy:L, 2qjy:I, 2qjy:R, 2qjy:O, 7tce:C, 7tce:G, 7tce:M, 7tce:Q, 7tlj:G, 7tlj:C
17 3cwb:E 196 45 0.1377 0.1173 0.5111 1.77e-09 3cwb:R, 3h1h:E, 3h1h:R, 3h1i:R, 3h1i:E, 3h1j:R, 3h1j:E, 3h1k:E, 3h1k:R, 3h1l:E, 3h1l:R, 3l70:E, 3l70:R, 3l71:E, 3l71:R, 3l72:E, 3l72:R, 3l73:E, 3l73:R, 3l74:E, 3l74:R, 3l75:E, 3l75:R, 3tgu:E, 3tgu:R, 4u3f:E, 4u3f:R
18 2yiu:F 174 48 0.1497 0.1437 0.5208 1.89e-09 2yiu:C
19 8b6j:E 245 60 0.1617 0.1102 0.4500 2.14e-09 8b6j:e, 8bqs:E, 8bqs:e, 8gym:qE, 8gym:qe, 8gym:QE, 8gym:Qe, 8gzu:qE, 8gzu:qe, 8gzu:QE, 8gzu:Qe, 7tgh:3E
20 1zrt:E 183 47 0.1437 0.1311 0.5106 5.10e-09 6xi0:E, 6xi0:R, 6xkt:E, 6xkt:R, 6xku:E, 6xku:R, 6xkv:E, 6xkv:R, 6xkw:E, 6xkw:R, 6xkx:E, 6xkx:R, 6xkz:E, 6xkz:R, 1zrt:R
21 8bpx:AD 196 48 0.1377 0.1173 0.4792 8.81e-09 8bel:D, 8bel:N, 8bpx:BD, 8bq5:AD, 8bq5:BD, 8bq6:AD, 8bq6:BD
22 8smr:Z 194 71 0.1557 0.1340 0.3662 5.11e-07 8smr:C, 8snh:C, 8snh:Z
23 7qhm:A 402 104 0.1677 0.0697 0.2692 1.01e-06 7q21:A, 7q21:a, 7qhm:N, 7qho:A, 7qho:N
24 3fou:A 156 80 0.1796 0.1923 0.3750 2.18e-05 3fou:B, 1nyk:A, 1nyk:B
25 1jm1:A 202 94 0.1916 0.1584 0.3404 6.72e-05
26 7e1v:A 378 64 0.1317 0.0582 0.3438 1.23e-04 7e1v:M, 7e1w:M, 7e1w:A, 7e1x:M, 7e1x:A, 8hcr:A, 8hcr:M
27 6adq:A 382 64 0.1317 0.0576 0.3438 2.64e-04 6adq:M, 6hwh:A, 6hwh:B, 8ovc:M, 8ovc:G, 8ovd:M, 8ovd:G, 7rh5:M, 7rh5:Y, 7rh6:M, 7rh6:Y, 7rh7:Y, 7rh7:M
28 1g8j:D 129 46 0.0838 0.1085 0.3043 4.19e-04 1g8j:B
29 7yr9:A 146 68 0.1257 0.1438 0.3088 4.31e-04 7yr9:B, 7yra:A, 7yra:B
30 6kls:A 134 42 0.1078 0.1343 0.4286 6.39e-04 6kls:D, 6klv:A, 6klv:D
31 8cff:B 134 46 0.0838 0.1045 0.3043 0.002 8cff:D, 8cff:F, 8cff:H, 8cgs:B, 8cgs:D, 8cgs:F, 8cgs:H, 8ch9:B, 8ch9:D, 8ch9:F, 8ch9:H, 1g8k:B, 1g8k:D, 1g8k:F, 1g8k:H
32 3en1:A 424 88 0.1677 0.0660 0.3182 0.017 3eqq:A
33 5aeu:A 433 88 0.1677 0.0647 0.3182 0.041 5aeu:C, 5aeu:E, 5aeu:G, 5aew:A, 5aew:C, 5aew:E, 5aew:G, 5aew:I, 5aew:K, 5aew:M, 5aew:O, 5aew:Q, 5aew:S, 5aew:U, 5aew:W, 2xr8:A, 2xr8:C, 2xr8:E, 2xr8:G, 2xr8:I, 2xr8:K, 2xr8:M, 2xr8:O, 2xr8:Q, 2xr8:S, 2xr8:U, 2xr8:W, 2xrx:A, 2xrx:C, 2xrx:E, 2xrx:G, 2xrx:I, 2xrx:K, 2xrx:M, 2xrx:O, 2xrx:Q, 2xrx:S, 2xrx:U, 2xrx:W, 2xsh:A, 2xsh:C, 2xsh:E, 2xsh:G, 2xsh:I, 2xsh:K, 2xso:A, 2xso:C, 2xso:E, 2xso:G, 2xso:I, 2xso:K, 2xso:M, 2xso:O, 2xso:Q, 2xso:S, 2xso:U, 2xso:W, 2yfi:A, 2yfi:C, 2yfi:E, 2yfi:G, 2yfi:I, 2yfi:K, 2yfj:A, 2yfj:C, 2yfj:E, 2yfj:G, 2yfj:I, 2yfj:K, 2yfl:A, 2yfl:C, 2yfl:E, 2yfl:G, 2yfl:I, 2yfl:K
34 6wn3:B 328 40 0.1018 0.0518 0.4250 0.057 7szh:A, 7szh:B, 7szh:C, 6wn3:A, 6wn3:C, 6wnb:A, 6wnb:B, 6wnb:C
35 1wql:A 436 101 0.1856 0.0711 0.3069 0.058
36 7sze:B 329 40 0.1018 0.0517 0.4250 0.071 7sze:A, 7sze:C, 7szf:A, 7szf:B, 7szf:C, 7szg:A, 7szg:B, 7szg:C, 6wnc:A, 6wnc:B, 6wnc:C, 6wnd:A, 6wnd:B, 6wnd:C
37 2ckf:E 433 84 0.1677 0.0647 0.3333 0.15 2ckf:C
38 8qyg:B 225 111 0.1856 0.1378 0.2793 0.64 8q5g:A, 8q5g:B, 8qyg:A
39 4ayb:B 1103 28 0.0599 0.0091 0.3571 0.78 3hkz:B, 3hkz:J, 2pmz:B, 2pmz:R, 4v8s:AR, 4v8s:BB, 2waq:B, 2wb1:B, 2wb1:R, 2y0s:B, 2y0s:R
40 7ok0:B 1109 26 0.0479 0.0072 0.3077 2.7 7oq4:B, 7oqy:B
41 4aay:B 132 62 0.1078 0.1364 0.2903 3.0 4aay:D, 4aay:F, 4aay:H, 8ccq:B, 8ccq:D, 8ccq:F, 8ccq:H, 8ed4:B, 8ed4:D, 8ed4:F, 8ed4:H, 5nqd:B, 5nqd:D, 5nqd:F, 5nqd:H
42 4dzr:A 163 32 0.0719 0.0736 0.3750 3.8
43 2b1x:A 441 56 0.1138 0.0431 0.3393 4.7 2b1x:C, 2b1x:E, 2b24:A, 2b24:C, 2b24:E
44 8bbq:A 324 52 0.1018 0.0525 0.3269 8.9 8bbq:B, 8bbr:A, 8bbr:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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