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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
NTFIFPATFMWGTSTSSYQIEGGTDEGGRTPSIWDTFCQIPGKVIGGDCGDVACDHFHHFKEDVQLMKQLGFLHYRFSVA
WPRIMPAAGIINEEGLLFYEHLLDEIELAGLIPMLTLYHWDLPQWIEDEGGWTQRETIQHFKTYASVIMDRFGERINWWN
TINEPYCASILGYGTGEHAPGHENWREAFTAAHHILMCHGIASNLHKEKGLTGKIGITLNMEHVDAASERPEDVAAAIRR
DGFINRWFAEPLFNGKYPEDMVEWYGTYLNGLDFVQPGDMELIQQPGDFLGINYYTRSIIRSTNDASLLQVEQVHMEEPV
TDMGWEIHPESFYKLLTRIEKDFSKGLPILITENGAAMRDELVNGQIEDTGRHGYIEEHLKACHRFIEEGGQLKGYFVWS
FLDNFEWAWGYSKRFGIVHINYETQERTPKQSALWFKQMMAKNGF

The query sequence (length=445) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2jie:A 445 445 1.0000 1.0000 1.0000 0.0 2o9r:A, 2o9t:A, 2z1s:A
2 6z1m:A 423 445 0.4876 0.5130 0.4876 1.17e-155 6z1m:B, 6z1m:C
3 7wdo:A 445 444 0.4719 0.4719 0.4730 2.97e-151 7wdn:A, 7wdp:A, 7wdr:A, 7wds:A, 7wdv:A
4 4ptv:A 445 443 0.4584 0.4584 0.4605 3.54e-151 4ptv:B, 4ptw:A, 4ptw:B, 4ptx:A, 4ptx:B
5 5ns8:A 440 437 0.4562 0.4614 0.4645 1.57e-144 5ns8:B, 5ns8:C
6 6qwi:A 448 442 0.4472 0.4442 0.4502 2.16e-142 1bgg:B, 1bgg:C, 1bgg:D, 1e4i:A, 6qwi:B, 6r4k:A, 6r4k:B, 1uyq:A
7 6z1h:A 382 445 0.4517 0.5262 0.4517 1.58e-141
8 4hz7:A 441 444 0.4674 0.4717 0.4685 3.02e-139 4hz8:A
9 8ivy:A 451 446 0.4292 0.4235 0.4283 2.73e-138 8ivy:B
10 1gnx:A 447 449 0.4539 0.4519 0.4499 4.42e-137 1gnx:B, 1gon:A
11 3wh6:A 443 440 0.4472 0.4492 0.4523 5.21e-136 5ayi:A, 3wh7:A, 3wh8:A
12 6m6l:B 445 438 0.4180 0.4180 0.4247 1.64e-129
13 5gnx:A 451 448 0.4247 0.4191 0.4219 3.46e-125 5gnx:B, 5gny:A, 5gny:B, 5gny:C, 5gny:D, 5gnz:A, 5gnz:B, 5gnz:C, 5gnz:D, 5gnz:H, 5gnz:I, 5gnz:J, 5gnz:K
14 2jal:B 444 450 0.4292 0.4302 0.4244 3.73e-123 2cbu:A, 2cbu:B, 2cbv:A, 2cbv:B, 2ces:A, 2ces:B, 2cet:A, 2cet:B, 2j75:A, 2j75:B, 2j77:A, 2j77:B, 2j78:A, 2j78:B, 2j79:A, 2j79:B, 2j7b:A, 2j7b:B, 2j7c:A, 2j7c:B, 2j7d:A, 2j7d:B, 2j7e:A, 2j7e:B, 2j7f:A, 2j7f:B, 2j7g:A, 2j7g:B, 2j7h:A, 2j7h:B, 2jal:A, 5n6s:A, 5n6s:B, 5n6s:C, 5n6s:D, 5n6t:A, 5n6t:B, 1oif:A, 1oif:B, 1oim:A, 1oim:B, 1oin:A, 1oin:B, 5oss:B, 1uz1:A, 1uz1:B, 2vrj:A, 2vrj:B, 1w3j:A, 1w3j:B, 2wbg:A, 2wbg:B, 2wbg:C, 2wbg:D, 2wc3:A, 2wc3:B, 2wc3:C, 2wc3:D, 2wc4:A, 2wc4:B, 2wc4:C, 2wc4:D
15 6jfp:A 444 444 0.4045 0.4054 0.4054 1.53e-116
16 6rjm:B 456 442 0.4090 0.3991 0.4118 3.58e-116 6rjm:A, 6rjo:A, 6rjo:B, 6rk2:A, 6rk2:B
17 5yj7:C 490 459 0.4022 0.3653 0.3900 5.70e-106
18 2e40:A 459 460 0.4022 0.3900 0.3891 5.51e-105 2e40:B
19 3ahv:A 472 465 0.3888 0.3665 0.3720 4.27e-97 3aht:A, 3aht:B, 3ahv:B, 7bzm:A, 7bzm:B, 3f4v:A, 3f4v:B, 3f5j:A, 3f5j:B, 3f5k:A, 3f5k:B, 3f5l:A, 3f5l:B, 4qlj:A, 4qlj:B, 4qlk:A, 4qlk:B, 4qll:A, 4qll:B, 2rgl:A, 2rgl:B, 2rgm:A, 2rgm:B, 3scn:A, 3scn:B, 3sco:A, 3sco:B, 3scp:A, 3scp:B, 3scq:A, 3scq:B, 3scr:A, 3scr:B, 3scs:A, 3scs:B, 3sct:A, 3sct:B, 3scu:A, 3scu:B, 3scv:A, 3scv:B, 3scw:A, 3scw:B
20 7d6a:B 477 470 0.3933 0.3669 0.3723 8.73e-97 7d6a:A, 7d6b:A, 7d6b:B
21 2jf6:B 472 470 0.3820 0.3602 0.3617 4.41e-94 2jf6:A, 3zj7:A, 3zj7:B, 3zj8:A, 3zj8:B
22 5yif:A 459 464 0.3640 0.3529 0.3491 1.71e-93 5yif:B
23 3ahy:B 466 467 0.4067 0.3884 0.3876 2.65e-93 3ahy:A, 3ahy:C, 3ahy:D
24 3wq5:A 475 477 0.3730 0.3495 0.3480 4.24e-92 3wq5:B, 3wq6:A, 3wq6:B
25 3u57:A 471 468 0.3978 0.3758 0.3782 1.17e-91 4atl:A, 4atl:B, 4ek7:A, 4ek7:B, 3u57:B, 3u5y:A, 3u5y:B, 3zj6:A, 3zj6:B
26 4jie:A 484 466 0.3618 0.3326 0.3455 1.40e-87 4re2:A, 4re3:A, 4re4:A
27 3gnr:A 478 476 0.3663 0.3410 0.3424 1.44e-87 3wba:A, 3wbe:A
28 3ptk:A 478 480 0.4135 0.3849 0.3833 1.62e-86 3ptk:B, 3ptm:A, 3ptm:B, 3ptq:A, 3ptq:B
29 8b80:A 474 473 0.3663 0.3439 0.3446 4.14e-86 8b81:A, 8b81:B, 5okb:B, 5okb:C, 5okb:D, 5oke:C, 5oke:D, 5oke:A, 5oke:B, 5okg:C, 5okg:D, 5okg:A, 5okg:B, 5okk:A, 5okk:B, 5okq:A, 5okq:B, 5okr:A, 5okr:B, 5oks:A, 5oks:B, 4zen:A, 4zen:B, 4zep:A, 4zep:B, 4zfm:D, 4zfm:A, 4zfm:B, 4zfm:C
30 1v03:A 487 474 0.3551 0.3244 0.3333 8.52e-83
31 3aiq:A 491 472 0.3483 0.3157 0.3284 6.14e-82 3air:A, 3ais:A, 3aiv:A, 3aiw:A
32 3vif:A 473 470 0.3730 0.3510 0.3532 6.84e-82 3ahz:A, 3ai0:A, 3vig:A, 3vij:A, 3vik:A, 3vil:A, 3vim:A, 3vin:A, 3vio:A, 3vip:A
33 2e9l:A 466 469 0.3528 0.3369 0.3348 5.19e-77 2e9m:A, 3vkk:A, 2zox:A
34 4pbg:A 468 465 0.3326 0.3162 0.3183 1.15e-74 4pbg:B
35 1e55:A 492 479 0.3438 0.3110 0.3194 7.05e-72 1e1f:A, 1e1f:B, 1e4n:A, 1e4n:B, 1e55:B, 1e56:A, 1e56:B, 1h49:B, 1h49:A, 1v08:A, 1v08:B
36 7z1i:A 493 483 0.3213 0.2901 0.2961 7.33e-64 7z1i:B, 7z1i:D
37 5w21:A 922 457 0.3303 0.1594 0.3217 7.27e-62 7ysh:A, 7ysu:A, 7ysw:A
38 5w21:A 922 469 0.2629 0.1269 0.2495 3.29e-32 7ysh:A, 7ysu:A, 7ysw:A
39 1dwa:M 499 477 0.3258 0.2906 0.3040 9.22e-61 1dwf:M, 1dwg:M, 1dwh:M, 1dwi:M, 1dwj:M, 1e4m:M, 1e6q:M, 1e6s:M, 1e6x:M, 1e70:M, 1e71:M, 1e72:M, 1e73:M, 1myr:A, 1w9b:M, 1w9d:M, 2wxd:M
40 5naq:A 461 463 0.3101 0.2993 0.2981 2.96e-58 5naq:B, 5naq:C, 5naq:D, 5naq:E, 5naq:F
41 5foo:A 463 476 0.3079 0.2959 0.2878 5.52e-57 5foo:B, 5foo:C, 5foo:D, 5foo:E, 5foo:F
42 4f66:A 478 482 0.3101 0.2887 0.2863 1.71e-53 4f66:B, 4f79:A, 4gpn:A, 4gpn:B
43 5van:A 861 453 0.2989 0.1545 0.2936 1.07e-51 6nfj:A, 6nfj:D, 5vaq:A
44 5van:A 861 454 0.2449 0.1266 0.2401 9.41e-26 6nfj:A, 6nfj:D, 5vaq:A
45 4ipn:E 463 469 0.2809 0.2700 0.2665 4.53e-51 4ipn:B
46 7f1n:A 502 509 0.2989 0.2649 0.2613 1.90e-48 7f1n:B
47 3qom:A 479 472 0.3011 0.2797 0.2839 7.27e-46
48 6m4f:C 543 488 0.2989 0.2449 0.2725 4.70e-39 6m4e:A, 6m4f:E, 6m55:A, 6m55:D
49 4ha3:A 489 492 0.2674 0.2434 0.2419 6.80e-37 4ha4:A
50 2ceq:A 489 501 0.2674 0.2434 0.2375 1.54e-35 2ceq:B, 2cer:A, 2cer:B, 4ean:A, 4ean:B, 5ixe:A, 5ixe:B, 1uwr:A, 1uwr:B, 1uws:B, 1uws:A, 1uwt:A, 1uwt:B, 1uwu:A, 1uwu:B, 7uz1:A, 7uz1:B, 7uz2:A, 7uz2:B
51 8kaq:D 364 168 0.1393 0.1703 0.3690 1.73e-27
52 8kaq:D 364 152 0.0989 0.1209 0.2895 1.87e-12
53 8kaq:A 401 168 0.1393 0.1546 0.3690 2.69e-27 8kaq:B, 8kaq:C
54 8kaq:A 401 152 0.1034 0.1147 0.3026 3.77e-13 8kaq:B, 8kaq:C
55 1hiz:A 375 122 0.0652 0.0773 0.2377 0.078 3mmd:A, 4prw:A, 4pud:A, 4pue:A, 1r85:A, 1r86:A, 1r87:A
56 7kgy:A 593 115 0.0674 0.0506 0.2609 0.40 7kgy:B, 7kgy:C, 7kgy:D
57 3zmr:A 469 50 0.0337 0.0320 0.3000 1.7 3zmr:B
58 4w8l:A 352 75 0.0427 0.0540 0.2533 1.9 4w8l:B, 4w8l:C
59 3f1y:A 318 128 0.0809 0.1132 0.2812 2.1 3f1y:C, 3kia:A, 3kia:C, 3o3p:A, 3o3p:B
60 8jj8:F 375 78 0.0517 0.0613 0.2949 2.4 8jjl:A, 8jjo:F
61 3nj3:A 327 53 0.0315 0.0428 0.2642 3.7 3nj3:B, 1vbr:A, 1vbr:B
62 6jdy:A 319 48 0.0247 0.0345 0.2292 5.0 6jdy:B, 6jdz:A, 6jdz:B, 6je0:A, 6je0:B, 6je1:A, 6je1:B, 6je2:A, 6je2:B, 7wh7:A, 7wh7:B, 7whe:B
63 3u7b:B 326 48 0.0247 0.0337 0.2292 5.1
64 3rdk:B 334 99 0.0539 0.0719 0.2424 6.2 4e4p:A, 4e4p:B, 3rdk:A, 3ro8:A, 3ro8:B, 3ro8:C, 3ro8:D, 3ro8:E, 3ro8:F, 3ro8:G, 3ro8:H
65 6fj1:A 253 138 0.0876 0.1542 0.2826 6.2 6fj1:B, 6fj1:C, 3zgp:A
66 4nf9:A 216 97 0.0472 0.0972 0.2165 10.0 4nf9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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