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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
NSSAEVSVESPSFSFNCAHFIAYNGFRETLHGHNYNVSLKVRGYVRDDGYVIDFSILKEKVKKVCNKLDHHFILPIYSDV
LKFENVKNNIKIICEDNSEYSFPERDCIKLPIKHSSTEEIGQYILNQLIEEMDVSLLKSRHIHYIEISVSESPTQKAIVH
KYI

The query sequence (length=163) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1y13:A 163 163 1.0000 1.0000 1.0000 4.38e-118 1y13:C, 1y13:B
2 2a0s:A 163 160 0.7178 0.7178 0.7312 7.90e-89 2a0s:B, 3lx3:A, 3lze:A, 3m0n:A
3 4ntk:A 121 82 0.1656 0.2231 0.3293 3.57e-07 4ntk:E, 4ntk:B, 4ntk:C, 4ntk:D, 4ntk:F, 4ntm:A, 4ntm:E, 4ntm:B, 4ntm:C, 4ntm:D, 4ntm:F, 4ntn:A, 4ntn:B, 4ntn:C, 4ntn:D, 4ntn:E, 4ntn:F, 3qn0:A, 3qn0:B, 3qn0:C, 3qn0:D, 3qn0:E, 3qn0:F, 3qn9:A, 3qn9:B, 3qna:A, 3qna:B, 3qna:C, 3qna:D, 3qna:E, 3qna:F
4 2dtt:B 115 57 0.1166 0.1652 0.3333 5.72e-06 2dtt:A, 2dtt:C, 2dtt:D, 2dtt:F, 2dtt:E
5 2oba:B 121 77 0.1411 0.1901 0.2987 0.001 2oba:A, 2oba:C, 2oba:D, 2oba:E, 2oba:F
6 7v0f:A 182 62 0.1166 0.1044 0.3065 0.015 7v0f:B
7 2g64:A 140 41 0.1043 0.1214 0.4146 0.041
8 1b66:A 138 78 0.1350 0.1594 0.2821 0.31 1b66:B, 1b6z:A, 1b6z:B, 1gtq:A, 1gtq:B
9 6v0q:A 119 62 0.1104 0.1513 0.2903 1.5 5mq1:A, 6v0q:B, 6v0q:C, 6v0q:D, 6v16:A, 6v16:B, 6v17:A, 6v17:B, 6v1e:A, 6v1f:A, 6v1h:A
10 8oki:A 901 57 0.0920 0.0166 0.2632 4.2 8cro:A, 8orq:A, 8p2i:A, 8rbo:A
11 3jyg:A 180 56 0.1043 0.0944 0.3036 4.9 3jyg:B, 3jyg:C, 3jyg:D, 3jyg:E, 3jyg:F
12 5fog:D 284 61 0.0982 0.0563 0.2623 7.0 5fog:A, 5fog:B, 5fog:C, 5fol:A, 5fom:A
13 1r9d:A 786 67 0.1227 0.0254 0.2985 8.8 1r9d:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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