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BioLiP
>protein
NSPRIVQSNDLTEAAYSLSRDQKRMLYLFVDQIRKSHDGICEIHVAKYAEIFGLTSAEASKDIRQALKSFAGKEVVFYYE
SFPWFIKPAHSPSRGLYSVHINPYLIPFFILQNRFTQFRLSETKEITNPYAMRLYESLCQYRKPDGSGIVSLKIDWIIER
YQLPQSYQRMPDFRRRFLQVCVNEINSRTPMRLSYIEKKKGRQTTHIVFSFRDI

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8aan:A 228 215 1.0000 0.9386 0.9953 1.62e-160 8ac8:A, 8ac8:C, 8d86:C, 8d8m:C, 1rep:C, 7rva:C, 7sdp:C, 7sgc:C, 7soz:C, 7spm:C, 8tip:C, 8tiq:C, 8tir:C, 8tis:C, 8tit:C, 8tiu:C, 8tiv:C, 8tiw:C, 8tix:C, 8tiy:C, 8tiz:C, 8tj0:C, 8tj1:C, 7u6k:C, 7u7o:C, 7ufx:C, 7uog:C, 7ur0:C, 7uv6:C, 7uv7:C, 7uxy:C, 2z9o:A, 2z9o:B
2 4i3b:A 139 48 0.0561 0.0863 0.2500 0.39 4i3b:B, 4i3b:C, 4i3b:D, 4i3b:E, 4i3b:F, 4i3c:A, 4i3c:B, 4i3d:A, 4i3d:B, 4i3d:C, 4i3d:D
3 1e6z:B 498 42 0.0794 0.0341 0.4048 0.97 7c34:A, 7c34:B, 7c92:A, 7c92:B, 7cb1:A, 7cb1:B, 1e6r:A, 1e6r:B, 1e6z:A, 1h0g:B, 1h0g:A, 1h0i:A, 1h0i:B, 6jk9:A, 6jk9:B, 6jkf:A, 6jkf:B, 1o6i:A, 1o6i:B, 1ogg:A, 1ogg:B, 1ur8:A, 1ur8:B, 1ur9:A, 1ur9:B, 1w1p:A, 1w1p:B, 1w1t:A, 1w1t:B, 1w1v:A, 1w1v:B, 1w1y:A, 1w1y:B, 3wd1:A, 3wd2:A, 3wd3:A, 3wd4:A, 4z2g:A, 4z2h:A, 4z2i:A, 4z2j:A, 4z2k:A, 4z2l:A
4 7u1x:A 439 114 0.1495 0.0729 0.2807 3.4 7t7k:B, 7t7k:A, 7t7o:B, 7t7o:A, 7u1v:A, 7u1v:B, 7u1x:B, 7u1y:A
5 7ubz:D 202 53 0.0748 0.0792 0.3019 4.2 7ubz:B
6 8i9z:CE 465 71 0.0841 0.0387 0.2535 6.1 8i9p:CE, 8i9r:CE, 8i9t:CE, 8i9v:CE, 8i9w:CE, 8i9x:CE, 8i9y:CE, 8ia0:CE
7 8tdi:G 386 64 0.0888 0.0492 0.2969 6.9 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
8 9cys:A 277 53 0.0748 0.0578 0.3019 7.0
9 3i6e:A 356 44 0.0701 0.0421 0.3409 9.9 3i6e:B, 3i6e:C, 3i6e:D, 3i6e:E, 3i6e:F, 3i6e:G, 3i6e:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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