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BioLiP
>protein
NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8k8c:A 60 60 1.0000 1.0000 1.0000 6.51e-36 8k8c:B, 1nwq:A, 1nwq:C
2 1h88:B 71 60 0.7667 0.6479 0.7667 1.68e-27 2e42:A, 2e42:B, 2e43:A, 2e43:B, 1gtw:A, 1gtw:B, 1gu4:A, 1gu4:B, 1gu5:A, 1gu5:B, 1h88:A, 1h89:A, 1h89:B, 1h8a:A, 1h8a:B, 1hjb:A, 1hjb:B, 1hjb:D, 1hjb:E, 1io4:A, 1io4:B, 8k8d:A, 8k8d:B, 7l4v:A, 7l4v:B, 6mg1:A, 6mg1:B, 6mg2:A, 6mg2:B, 6mg3:A, 6mg3:B, 7upz:A, 7upz:B
3 2c9l:Y 63 51 0.3167 0.3016 0.3725 4.88e-04 2c9l:Z, 2c9n:Y, 2c9n:Z, 7nx5:A, 7nx5:B, 7nx5:E, 7nx5:F, 5szx:A, 5szx:B
4 6he3:A 422 55 0.3000 0.0427 0.3273 0.37 6hdz:A, 6hdz:B, 6he1:A, 6he1:B, 6he3:B
5 1ysa:C 57 47 0.3000 0.3158 0.3830 0.94 1dgc:A, 2dgc:A, 1ysa:D
6 7fd4:D 779 65 0.3333 0.0257 0.3077 1.8 7fd4:B, 7fd4:C, 7fd4:E, 7fd4:F, 7fd4:A, 7fd5:B, 7fd5:C, 7fd5:E, 7fd5:A, 7fd5:F, 7fd5:D, 7fid:D, 7fid:A, 7fid:B, 7fid:C, 7fid:E, 7fid:F, 7fie:B, 7fie:C, 7fie:D, 7fie:E, 7fie:A, 7fie:F, 7fiz:B, 7fiz:C, 7fiz:E, 7fiz:A, 7fiz:D, 7fiz:F, 8k3y:B, 8k3y:C, 8k3y:D, 8k3y:E, 6wqh:A, 6wqh:B, 6wqh:C, 6wqh:F, 6wqh:D, 6wqh:E, 4ypl:A, 4ypl:B, 4ypl:C, 4ypl:F, 4ypl:D, 4ypl:E, 4ypm:A, 7yph:B, 7yph:D, 7ypi:A, 7ypi:B, 7ypj:A, 7ypj:B, 7ypj:C, 7ypj:D, 7ypk:F, 7ypk:B, 7ypk:E, 7ypk:A, 7ypk:C, 7ypk:D, 7yuv:A, 7yuv:B, 7yuv:C, 7yuw:A, 7yuw:B, 7yuw:C, 7yuw:D, 7yux:A, 7yux:C, 7yux:E, 7yux:D, 7yux:B
7 2gez:C 166 37 0.2167 0.0783 0.3514 3.1 2gez:A, 2gez:E, 2gez:G
8 5kod:D 566 34 0.2167 0.0230 0.3824 3.3
9 8wuw:H 529 61 0.3000 0.0340 0.2951 3.8 8wuw:A, 8wuw:B, 8wuw:I, 8wuw:C, 8wuw:J, 8wuw:D, 8wuw:K, 8wuw:E, 8wuw:L, 8wuw:F, 8wuw:M, 8wuw:G, 8wuw:N, 8wux:A, 8wux:H, 8wux:B, 8wux:I, 8wux:C, 8wux:J, 8wux:D, 8wux:K, 8wux:E, 8wux:L, 8wux:F, 8wux:M, 8wux:G, 8wux:N
10 2dei:A 350 46 0.3000 0.0514 0.3913 3.9 2dej:A
11 7yq5:E 799 20 0.1667 0.0125 0.5000 4.3 7pg0:A, 7pg2:A, 7pg3:A, 7pg4:A, 7sl4:B, 7yq6:E, 7yq6:F
12 8guy:F 835 20 0.1667 0.0120 0.5000 4.7 6ce7:P, 6ce9:M, 6ce9:P, 6ceb:M, 6ceb:P, 8guy:E, 6hn5:E, 5j3h:E, 7kd6:E, 7kd6:K, 7kd6:Q, 7kd6:W, 5kqv:E, 5kqv:F, 7mqo:F, 7mqo:E, 7mqr:E, 7mqr:F, 4oga:E, 7pg0:B, 7pg2:B, 7pg3:B, 7pg4:B, 7qid:C, 7sl3:A, 7sl3:B, 6sof:A, 6sof:C, 7u6e:F, 7u6e:E, 6vep:E, 6vep:K, 6vep:Q, 6vep:W, 6veq:K, 6veq:E, 3w11:E, 3w12:E, 3w13:E, 4xss:E, 4xst:E, 7yq3:F, 7yq3:E, 7yq4:E, 7yq4:F, 7yq5:F
13 7qv3:w 593 35 0.2000 0.0202 0.3429 5.0
14 6oxd:A 736 55 0.2500 0.0204 0.2727 5.1 6oxc:A
15 2dq0:A 447 54 0.2833 0.0380 0.3148 5.3 2dq0:B, 2zr2:A, 2zr2:B
16 6hn5:F 323 20 0.1667 0.0310 0.5000 6.7
17 7umw:B 260 23 0.1500 0.0346 0.3913 8.1 1c14:A, 1c14:B, 5cg1:A, 5cg1:B, 5cg2:A, 5cg2:B, 4cv2:A, 4cv2:B, 4cv3:A, 4cv3:B, 4d46:A, 4d46:B, 1d8a:A, 1d8a:B, 1dfg:A, 1dfg:B, 1dfh:A, 1dfh:B, 1dfi:A, 1dfi:B, 1dfi:C, 1dfi:D, 1i2z:A, 1i2z:B, 1i30:A, 1i30:B, 4jqc:A, 4jqc:B, 4jx8:A, 4jx8:B, 1lx6:A, 1lx6:B, 1lxc:A, 1lxc:B, 1mfp:A, 1mfp:B, 3pjd:A, 3pjd:B, 3pje:A, 3pje:B, 3pjf:A, 3pjf:B, 1qg6:A, 1qg6:B, 1qg6:C, 1qg6:D, 1qsg:A, 1qsg:B, 1qsg:C, 1qsg:D, 1qsg:E, 1qsg:F, 1qsg:G, 1qsg:H, 7um8:A, 7um8:B, 7umw:A
18 5t01:A 62 51 0.3167 0.3065 0.3725 8.3 1a02:J, 1fos:F, 1fos:H, 5fv8:D, 2h7h:A, 2h7h:B, 1jnm:A, 1jnm:B, 1s9k:E, 5t01:B
19 5i50:B 96 38 0.2500 0.1562 0.3947 9.2 5i50:A, 1nkp:A, 1nkp:D
20 8k86:A 63 51 0.2667 0.2540 0.3137 9.4 8k86:B, 8k8a:A, 8k8a:B
21 7a5f:E6 122 27 0.1333 0.0656 0.2963 9.9 7a5g:E6, 7a5i:E6, 7a5k:E6, 8any:AE, 8csp:E, 8csq:E, 8csr:E, 8css:E, 8cst:E, 8csu:E, 3j9m:AE, 8k2a:SF, 7l08:AE, 6nu2:AE, 6nu3:AE, 7og4:AE, 8oir:AE, 8ois:AE, 7p2e:E, 7pnx:E, 7pny:E, 7pnz:E, 7po0:E, 7po1:E, 7po2:E, 7po3:E, 7qi4:AE, 7qi5:AE, 7qi6:AE, 8qrk:E, 8qrl:E, 8qrm:E, 8qrn:E, 6rw4:E, 6rw5:E, 6vlz:AE, 6vmi:AE, 8xt0:SF, 8xt2:SF, 6zm5:AE, 6zm6:AE, 6zs9:AE, 6zsa:AE, 6zsb:AE, 6zsc:AE, 6zsd:AE, 6zse:AE, 6zsg:AE

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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